| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcccgtcc | 8 | ||
| MIMAT0034466 | eca-miR-8937 | 1 | ........ | 8 | 100 |
| MIMAT0036594 | tch-miR-1247-5p | 2 | _....... | 8 | 87 |
| MIMAT0035727 | rno-miR-149-3p | 8 | _....... | 2 | 87 |
| MIMAT0035721 | rno-miR-1247-5p | 2 | _....... | 8 | 87 |
| MIMAT0033130 | ppc-miR-360-3p | 1 | _....... | 7 | 87 |
| MIMAT0028358 | mml-miR-1247-5p | 2 | _....... | 8 | 87 |
| MIMAT0025549 | bta-miR-1247-5p | 2 | _....... | 8 | 87 |
| MIMAT0016172 | ppy-miR-1247 | 2 | _....... | 8 | 87 |
| MIMAT0032099 | dvi-miR-92a-5p | 8 | _....... | 2 | 87 |
| MIMAT0007973 | ptr-miR-1247 | 2 | _....... | 8 | 87 |
| MIMAT0005899 | hsa-miR-1247-5p | 2 | _....... | 8 | 87 |
| MIMAT0014800 | mmu-miR-1247-5p | 2 | _....... | 8 | 87 |
| MIMAT0020802 | dme-miR-92a-5p | 8 | _....... | 2 | 87 |
| MIMAT0035220 | dme-miR-9378-3p | 8 | ......t. | 1 | 87 |
| MIMAT0007121 | oan-miR-1381-3p | 8 | ......a. | 1 | 87 |
| MIMAT0037264 | rno-miR-676 | 1 | __...... | 6 | 75 |
| MIMAT0036493 | tch-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0036009 | chi-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0035685 | bra-miR9563a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035664 | bra-miR9555a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035566 | dvi-miR-311-5p | 7 | __...... | 2 | 75 |
| MIMAT0035303 | gsa-miR-184b-3p | 7 | __...... | 2 | 75 |
| MIMAT0035249 | gsa-miR-184a-3p | 7 | __...... | 2 | 75 |
| MIMAT0034705 | eca-miR-676 | 1 | __...... | 6 | 75 |
| MIMAT0033441 | str-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0033079 | ppc-miR-2238l-5p | 1 | __...... | 6 | 75 |
| MIMAT0031602 | bbe-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0030837 | prd-miR-7967-3p | 7 | __...... | 2 | 75 |
| MIMAT0030789 | prd-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0030698 | prd-miR-7925-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030273 | bdi-miR7763-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030166 | bdi-miR7721-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032211 | lva-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0032163 | pmi-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0029441 | ipu-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0028518 | mdo-miR-92b-5p | 8 | __...... | 3 | 75 |
| MIMAT0026418 | sbi-miR6224c-5p | 3 | __...... | 8 | 75 |
| MIMAT0026416 | sbi-miR6224b-5p | 3 | __...... | 8 | 75 |
| MIMAT0026414 | sbi-miR6224a-5p | 3 | __...... | 8 | 75 |
| MIMAT0026244 | ccr-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0027977 | mmu-miR-7036a-3p | 1 | __...... | 6 | 75 |
| MIMAT0025634 | gga-miR-6564-3p | 7 | __...... | 2 | 75 |
| MIMAT0025590 | gga-miR-6542-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025015 | hme-miR-6308-3p | 7 | _......_ | 2 | 75 |
| MIMAT0024943 | hme-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0024477 | mse-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0024365 | ppy-miR-676 | 1 | __...... | 6 | 75 |
| MIMAT0024325 | mml-miR-676-3p | 1 | __...... | 6 | 75 |
| MIMAT0024191 | ggo-miR-483 | 8 | _......_ | 3 | 75 |
| MIMAT0024011 | cgr-miR-92b-5p | 8 | __...... | 3 | 75 |
| MIMAT0023809 | cgr-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0023294 | osa-miR5821 | 7 | __...... | 2 | 75 |
| MIMAT0022536 | ola-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0023073 | tur-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0021814 | aca-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0021502 | asu-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0019984 | hsa-miR-4804-5p | 8 | __...... | 3 | 75 |
| MIMAT0019766 | hsa-miR-4681 | 7 | ......__ | 2 | 75 |
| MIMAT0019648 | pma-miR-4614 | 6 | ......__ | 1 | 75 |
| MIMAT0019526 | pma-miR-216a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019493 | pma-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0018425 | nlo-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0018398 | ngi-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0018269 | gma-miR4368b | 8 | __...... | 3 | 75 |
| MIMAT0018848 | tca-miR-3878-5p | 7 | __...... | 2 | 75 |
| MIMAT0018528 | ame-miR-3049-3p | 2 | __...... | 7 | 75 |
| MIMAT0016562 | cin-miR-4036-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015671 | nvi-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0017484 | aly-miR168b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014715 | api-miR-184b | 7 | __...... | 2 | 75 |
| MIMAT0014561 | tgu-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0014424 | cqu-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0014207 | aae-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0014132 | api-miR-184a | 7 | __...... | 2 | 75 |
| MIMAT0013943 | ssc-miR-676-3p | 1 | __...... | 6 | 75 |
| MIMAT0017377 | ssc-miR-92b-5p | 8 | __...... | 3 | 75 |
| MIMAT0013841 | bta-miR-2883 | 3 | ......__ | 8 | 75 |
| MIMAT0012894 | eca-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0013627 | bmo-miR-2757-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012689 | isc-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0010060 | osa-miR2098-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009842 | cfa-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0009671 | spu-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0009633 | sko-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0009585 | lgi-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0009531 | cte-miR-184b | 7 | __...... | 2 | 75 |
| MIMAT0009530 | cte-miR-184a | 7 | __...... | 2 | 75 |
| MIMAT0009488 | bfl-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0009246 | bta-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0009122 | dya-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008989 | dwi-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008949 | dvi-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008904 | dsi-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008822 | dse-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008701 | dpe-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008674 | dmo-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008567 | dgr-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008512 | der-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008436 | dan-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0008374 | tca-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0006218 | mml-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0026810 | mml-miR-92b-5p | 8 | __...... | 3 | 75 |
| MIMAT0007414 | gga-miR-1557 | 1 | _......_ | 6 | 75 |
| MIMAT0006108 | cin-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0007045 | oan-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0017319 | rno-miR-92b-5p | 8 | __...... | 3 | 75 |
| MIMAT0005140 | ppt-miR1033e | 7 | _......_ | 2 | 75 |
| MIMAT0005139 | ppt-miR1033d | 7 | _......_ | 2 | 75 |
| MIMAT0005138 | ppt-miR1033c | 7 | _......_ | 2 | 75 |
| MIMAT0005137 | ppt-miR1033b | 7 | _......_ | 2 | 75 |
| MIMAT0005136 | ppt-miR1033a | 7 | _......_ | 2 | 75 |
| MIMAT0017278 | mmu-miR-92b-5p | 8 | __...... | 3 | 75 |
| MIMAT0004119 | mdo-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0004015 | sme-miR-748-3p | 7 | __...... | 2 | 75 |
| MIMAT0003782 | mmu-miR-676-3p | 1 | __...... | 6 | 75 |
| MIMAT0003613 | xtr-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0003444 | rlcv-miR-rL1-14-5p | 8 | __...... | 3 | 75 |
| MIMAT0004792 | hsa-miR-92b-5p | 8 | __...... | 3 | 75 |
| MIMAT0017201 | rno-miR-483-5p | 8 | _......_ | 3 | 75 |
| MIMAT0004782 | mmu-miR-483-5p | 8 | _......_ | 3 | 75 |
| MIMAT0002927 | tni-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0002926 | fru-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0002303 | mne-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0002302 | ppy-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0002301 | ptr-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0004761 | hsa-miR-483-5p | 8 | _......_ | 3 | 75 |
| MIMAT0002127 | ssc-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0001853 | dre-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0001504 | aga-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0001476 | ame-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0001232 | dps-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0001158 | gga-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0000998 | ebv-miR-BHRF1-3 | 8 | ......__ | 3 | 75 |
| MIMAT0000861 | rno-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0000454 | hsa-miR-184 | 7 | __...... | 2 | 75 |
| MIMAT0020837 | dme-miR-311-5p | 7 | __...... | 2 | 75 |
| MIMAT0000331 | dme-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0000213 | mmu-miR-184-3p | 7 | __...... | 2 | 75 |
| MIMAT0031885 | ath-miR168b-3p | 1 | _......_ | 6 | 75 |
