| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgcacgc | 8 | ||
| MIMAT0027044 | bdi-miR160a-3p | 8 | ........ | 1 | 100 |
| MIMAT0008398 | hsv1-miR-H2-5p | 1 | ........ | 8 | 100 |
| MIMAT0015209 | zma-miR160f-3p | 8 | ........ | 1 | 100 |
| MIMAT0022867 | osa-miR160e-3p | 8 | ........ | 1 | 100 |
| MIMAT0022854 | osa-miR160d-3p | 8 | ........ | 1 | 100 |
| MIMAT0019640 | pma-miR-4606 | 8 | _....... | 2 | 87 |
| MIMAT0018726 | tca-miR-3841-5p | 7 | ......._ | 1 | 87 |
| MIMAT0016659 | cin-miR-4085-5p | 1 | ......._ | 7 | 87 |
| MIMAT0015134 | zma-miR160d-3p | 7 | _....... | 1 | 87 |
| MIMAT0037201 | ata-miR160c-3p | 8 | .t...... | 1 | 87 |
| MIMAT0027054 | bdi-miR160c-3p | 8 | .t...... | 1 | 87 |
| MIMAT0027049 | bdi-miR160b-3p | 8 | .t...... | 1 | 87 |
| MIMAT0015316 | zma-miR160g-3p | 8 | .t...... | 1 | 87 |
| MIMAT0015135 | zma-miR160b-3p | 8 | .t...... | 1 | 87 |
| MIMAT0015132 | zma-miR160a-3p | 8 | .t...... | 1 | 87 |
| MIMAT0022852 | osa-miR160b-3p | 8 | .t...... | 1 | 87 |
| MIMAT0022851 | osa-miR160a-3p | 8 | .t...... | 1 | 87 |
| MIMAT0037213 | ata-miR164a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0037103 | ata-miR160b-3p | 6 | __...... | 1 | 75 |
| MIMAT0030619 | prd-miR-7903-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028614 | mdo-miR-7308-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027715 | mmu-miR-6907-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022176 | osa-miR5540 | 8 | ......__ | 3 | 75 |
| MIMAT0021327 | mtr-miR5283 | 6 | _......_ | 1 | 75 |
| MIMAT0027058 | bdi-miR160d-3p | 6 | __...... | 1 | 75 |
| MIMAT0019638 | pma-miR-4604 | 7 | _......_ | 2 | 75 |
| MIMAT0019594 | pma-miR-4562 | 6 | _......_ | 1 | 75 |
| MIMAT0018824 | tca-miR-3866-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018679 | tca-miR-3825-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018603 | ame-miR-3734 | 3 | ......__ | 8 | 75 |
| MIMAT0016807 | cin-miR-4189-5p | 7 | _......_ | 2 | 75 |
| MIMAT0014691 | hsv1-miR-H14-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014451 | tgu-miR-1451-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015318 | zma-miR164f-3p | 8 | _......_ | 3 | 75 |
| MIMAT0013702 | bmo-miR-2798 | 7 | ......__ | 2 | 75 |
| MIMAT0012212 | dme-miR-2499-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007324 | gga-miR-1451-5p | 1 | ......__ | 6 | 75 |
| MIMAT0005241 | smo-miR1088-3p | 6 | __...... | 1 | 75 |
| MIMAT0004416 | rrv-miR-rR1-7-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017274 | mmu-miR-466h-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003445 | rlcv-miR-rL1-14-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003429 | rlcv-miR-rL1-3 | 1 | ......__ | 6 | 75 |
| MIMAT0015133 | zma-miR160c-3p | 6 | __...... | 1 | 75 |
| MIMAT0022853 | osa-miR160c-3p | 6 | __...... | 1 | 75 |
