| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgccata | 8 | ||
| MIMAT0031001 | hsa-miR-8074 | 8 | _....... | 2 | 87 |
| MIMAT0018636 | tca-miR-3807-5p | 7 | ......._ | 1 | 87 |
| MIMAT0035805 | tae-miR9678-3p | 8 | ......g. | 1 | 87 |
| MIMAT0035222 | dme-miR-9379-3p | 8 | .g...... | 1 | 87 |
| MIMAT0022299 | hsa-miR-5590-5p | 1 | .t...... | 8 | 87 |
| MIMAT0015438 | bmo-miR-3255 | 1 | .t...... | 8 | 87 |
| MIMAT0036934 | oha-miR-458-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036766 | oha-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0036704 | oha-miR-135-5p | 6 | __...... | 1 | 75 |
| MIMAT0036595 | tch-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0036576 | tch-miR-652-3p | 7 | _......_ | 2 | 75 |
| MIMAT0036573 | tch-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0036518 | tch-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0036007 | chi-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0035953 | chi-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0035952 | chi-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0035729 | rno-miR-15a-3p | 3 | __...... | 8 | 75 |
| MIMAT0034637 | eca-miR-9092 | 6 | ......__ | 1 | 75 |
| MIMAT0033952 | esi-miR8618a | 7 | __...... | 2 | 75 |
| MIMAT0033759 | pxy-miR-8520-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033463 | str-miR-8394-3p | 6 | __...... | 1 | 75 |
| MIMAT0033251 | ppc-miR-8282b-3p | 6 | __...... | 1 | 75 |
| MIMAT0033080 | ppc-miR-2238l-3p | 7 | _......_ | 2 | 75 |
| MIMAT0032945 | ppc-miR-312b-3p | 6 | __...... | 1 | 75 |
| MIMAT0032647 | ssa-miR-458-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032429 | ssa-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0032348 | ssa-miR-135c-5p | 6 | __...... | 1 | 75 |
| MIMAT0032344 | ssa-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0032342 | ssa-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0032303 | ssa-miR-122-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032302 | ssa-miR-122-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031830 | cpa-miR8137 | 2 | ......__ | 7 | 75 |
| MIMAT0031600 | bbe-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0031587 | bbe-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0030980 | hsa-miR-8053 | 6 | ......__ | 1 | 75 |
| MIMAT0030672 | prd-miR-7907b-5p | 2 | __...... | 7 | 75 |
| MIMAT0030626 | prd-miR-7907a-5p | 2 | __...... | 7 | 75 |
| MIMAT0030534 | prd-miR-5358a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030533 | prd-miR-7884-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030355 | hhi-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0030160 | bdi-miR7719-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032210 | lva-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0032179 | pmi-miR-2006-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029754 | cbn-miR-7639 | 6 | __...... | 1 | 75 |
| MIMAT0029412 | ipu-miR-135c | 6 | __...... | 1 | 75 |
| MIMAT0029411 | ipu-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0029410 | ipu-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0029350 | lja-miR7527 | 7 | _......_ | 2 | 75 |
| MIMAT0029121 | gga-miR-7483-3p | 1 | __...... | 6 | 75 |
| MIMAT0029046 | gga-miR-7446-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028541 | mdo-miR-7283-3p | 2 | __...... | 7 | 75 |
| MIMAT0028424 | mmu-miR-7228-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026243 | ccr-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0026216 | ccr-miR-135c | 6 | __...... | 1 | 75 |
| MIMAT0027477 | hsa-miR-6788-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025795 | gga-miR-6689-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025429 | pol-miR-122-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025393 | tgu-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0024578 | bta-miR-652 | 7 | _......_ | 2 | 75 |
| MIMAT0024253 | ggo-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0024153 | ggo-miR-652 | 7 | _......_ | 2 | 75 |
| MIMAT0023992 | cgr-miR-652-3p | 7 | _......_ | 2 | 75 |
| MIMAT0023467 | hco-miR-5963 | 7 | __...... | 2 | 75 |
| MIMAT0022823 | sha-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0022657 | ola-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0022604 | ola-miR-122 | 3 | _......_ | 8 | 75 |
| MIMAT0022547 | ola-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0023112 | tur-miR-263a-5p | 6 | __...... | 1 | 75 |
| MIMAT0023101 | tur-miR-5736a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022026 | aca-miR-5409 | 7 | __...... | 2 | 75 |
| MIMAT0021750 | aca-miR-135-5p | 6 | __...... | 1 | 75 |
| MIMAT0021724 | aca-miR-122-3p | 3 | _......_ | 8 | 75 |
| MIMAT0020167 | dme-miR-4952-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019491 | pma-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0019465 | pma-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0019463 | pma-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0018788 | tca-miR-279d-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016425 | cin-miR-132-5p | 6 | __...... | 1 | 75 |
| MIMAT0016409 | cin-miR-135-5p | 6 | __...... | 1 | 75 |
| MIMAT0016085 | ppy-miR-652 | 7 | _......_ | 2 | 75 |
| MIMAT0015780 | ppy-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0015758 | ppy-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0015649 | bhv1-miR-B10 | 8 | _......_ | 3 | 75 |
| MIMAT0015440 | bmo-miR-3257-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014560 | tgu-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0014559 | tgu-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0026987 | tgu-miR-122-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026962 | tgu-miR-458-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013240 | eca-miR-652 | 7 | _......_ | 2 | 75 |
| MIMAT0013078 | eca-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0012952 | eca-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0012938 | eca-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0011705 | ppc-miR-312a | 6 | __...... | 1 | 75 |
| MIMAT0011668 | ppc-miR-2253b | 6 | __...... | 1 | 75 |
| MIMAT0009992 | bfl-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0009839 | cfa-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0009813 | nve-miR-2044-3p | 6 | __...... | 1 | 75 |
| MIMAT0009684 | spu-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0009487 | bfl-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0009245 | bta-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0009229 | bta-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0009228 | bta-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0008302 | ptr-miR-652 | 7 | _......_ | 2 | 75 |
| MIMAT0008032 | ptr-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0006743 | cfa-miR-652 | 7 | _......_ | 2 | 75 |
| MIMAT0010196 | cfa-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0006621 | cfa-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0006493 | mml-miR-652 | 7 | _......_ | 2 | 75 |
| MIMAT0006191 | mml-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0026813 | mml-miR-122a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0007745 | gga-miR-458a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007536 | gga-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0006132 | csa-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0006107 | cin-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0007175 | oan-miR-128-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007009 | oan-miR-458-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006870 | oan-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0006805 | oan-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0005740 | age-miR-506 | 7 | _......_ | 2 | 75 |
| MIMAT0005342 | rno-miR-652-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017291 | rno-miR-879-3p | 8 | __...... | 3 | 75 |
| MIMAT0004146 | mdo-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0004109 | mdo-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0004108 | mdo-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0026659 | mdo-miR-122-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003711 | mmu-miR-652-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003612 | xtr-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0003598 | xtr-miR-135 | 6 | __...... | 1 | 75 |
| MIMAT0003348 | dre-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0003322 | hsa-miR-652-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017213 | rno-miR-541-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017209 | mmu-miR-541-3p | 6 | ......__ | 1 | 75 |
| MIMAT0003090 | tni-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0003089 | fru-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0003052 | tni-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0003051 | fru-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0003032 | dre-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0003031 | tni-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0003030 | fru-miR-135b | 6 | __...... | 1 | 75 |
| MIMAT0002793 | ppa-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0002791 | mne-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0002789 | sla-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0002787 | ggo-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0002785 | ptr-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0002783 | mml-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0015757 | ppy-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0002253 | ggo-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0002252 | ptr-miR-135a | 6 | __...... | 1 | 75 |
| MIMAT0002251 | mml-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0002250 | ppa-miR-135 | 6 | __...... | 1 | 75 |
| MIMAT0002249 | age-miR-135 | 6 | __...... | 1 | 75 |
| MIMAT0002248 | lla-miR-135 | 6 | __...... | 1 | 75 |
| MIMAT0002145 | ssc-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0002121 | ssc-miR-135 | 6 | __...... | 1 | 75 |
| MIMAT0032005 | dre-miR-458-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001833 | dre-miR-135c | 6 | __...... | 1 | 75 |
| MIMAT0001273 | dre-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0001191 | gga-miR-183 | 6 | __...... | 1 | 75 |
| MIMAT0026550 | gga-miR-122-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001099 | gga-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0000860 | rno-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0000841 | rno-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0017116 | rno-miR-122-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000758 | hsa-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0000612 | mmu-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0000611 | rno-miR-135b-5p | 6 | __...... | 1 | 75 |
| MIMAT0000428 | hsa-miR-135a-5p | 6 | __...... | 1 | 75 |
| MIMAT0004590 | hsa-miR-122-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000261 | hsa-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0000212 | mmu-miR-183-5p | 6 | __...... | 1 | 75 |
| MIMAT0000147 | mmu-miR-135a-5p | 6 | __...... | 1 | 75 |
