| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgcttac | 8 | ||
| MIMAT0016955 | rlcv-miR-rL1-31-5p | 1 | ........ | 8 | 100 |
| MIMAT0033126 | ppc-miR-8302-3p | 7 | ......._ | 1 | 87 |
| MIMAT0033844 | atr-miR8568 | 1 | .g...... | 8 | 87 |
| MIMAT0018569 | ame-miR-3790 | 8 | ......t. | 1 | 87 |
| MIMAT0012414 | dps-miR-2572-5p | 8 | .t...... | 1 | 87 |
| MIMAT0037152 | ata-miR168-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035836 | bra-miR168a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035834 | bra-miR168c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035832 | bra-miR168b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035817 | bra-miR156a-3p | 1 | __...... | 6 | 75 |
| MIMAT0035585 | dvi-miR-965-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035454 | sly-miR156e-3p | 1 | __...... | 6 | 75 |
| MIMAT0035194 | efu-miR-9367 | 1 | ......__ | 6 | 75 |
| MIMAT0034050 | gra-miR8679 | 8 | ......__ | 3 | 75 |
| MIMAT0033920 | atr-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0033054 | ppc-miR-8277-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031454 | ppe-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0031388 | aly-miR173b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031350 | stu-miR156g-3p | 1 | __...... | 6 | 75 |
| MIMAT0031131 | sly-miR168b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031129 | sly-miR168a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0029112 | gga-miR-7479-5p | 8 | __...... | 3 | 75 |
| MIMAT0028789 | mdo-miR-7371h-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028703 | mdo-miR-7345-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026444 | sbi-miR6232a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025933 | mdm-miR168b | 1 | ......__ | 6 | 75 |
| MIMAT0025932 | mdm-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0027484 | hsa-miR-6792-5p | 6 | __...... | 1 | 75 |
| MIMAT0024996 | hme-miR-965 | 6 | _......_ | 1 | 75 |
| MIMAT0024666 | nta-miR168e | 1 | ......__ | 6 | 75 |
| MIMAT0024665 | nta-miR168d | 1 | ......__ | 6 | 75 |
| MIMAT0024664 | nta-miR168c | 1 | ......__ | 6 | 75 |
| MIMAT0024663 | nta-miR168b | 1 | ......__ | 6 | 75 |
| MIMAT0024662 | nta-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0027206 | lus-miR168b | 1 | ......__ | 6 | 75 |
| MIMAT0027185 | lus-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0024517 | cca-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0024428 | mse-miR-965 | 6 | _......_ | 1 | 75 |
| MIMAT0024414 | mes-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0023628 | bna-miR168b | 1 | ......__ | 6 | 75 |
| MIMAT0023367 | hco-miR-5911a | 6 | _......_ | 1 | 75 |
| MIMAT0022758 | vun-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0022235 | mtr-miR168c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0022061 | aca-miR-5439 | 1 | ......__ | 6 | 75 |
| MIMAT0021270 | mtr-miR168b | 1 | ......__ | 6 | 75 |
| MIMAT0020294 | ssp-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0022751 | cme-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0020673 | bdi-miR168-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020985 | gma-miR168b | 1 | ......__ | 6 | 75 |
| MIMAT0020390 | tcc-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0019961 | hsa-miR-4790-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019750 | hsa-miR-4670-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018215 | hvu-miR168-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018916 | smr-miR-965 | 6 | _......_ | 1 | 75 |
| MIMAT0022969 | ame-miR-965-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017531 | aly-miR173a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017483 | aly-miR168b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017481 | aly-miR168a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017410 | aly-miR156g-3p | 1 | __...... | 6 | 75 |
| MIMAT0017406 | aly-miR156e-3p | 1 | __...... | 6 | 75 |
| MIMAT0014744 | api-miR-965 | 6 | _......_ | 1 | 75 |
| MIMAT0014372 | cqu-miR-965 | 6 | _......_ | 1 | 75 |
| MIMAT0014268 | aae-miR-965 | 6 | _......_ | 1 | 75 |
| MIMAT0014168 | rco-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0014086 | crt-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0014073 | ccl-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0014055 | osa-miR2924 | 2 | ......__ | 7 | 75 |
| MIMAT0012674 | dpu-miR-965 | 6 | _......_ | 1 | 75 |
| MIMAT0012472 | dsi-miR-965-3p | 6 | _......_ | 1 | 75 |
| MIMAT0012250 | dps-miR-965-3p | 6 | _......_ | 1 | 75 |
| MIMAT0012208 | dme-miR-2497-5p | 6 | __...... | 1 | 75 |
| MIMAT0012197 | dme-miR-2490-5p | 8 | ......__ | 3 | 75 |
| MIMAT0032103 | sma-miR-71a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0010126 | bmo-miR-965-3p | 6 | _......_ | 1 | 75 |
| MIMAT0010108 | aga-miR-965 | 6 | _......_ | 1 | 75 |
| MIMAT0010095 | tca-miR-965-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009018 | dwi-miR-276b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006771 | cel-miR-1829c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006770 | cel-miR-1829b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005675 | vvi-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0005625 | bna-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0005490 | dme-miR-974-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005480 | dme-miR-965-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026724 | mtr-miR156c-3p | 2 | __...... | 7 | 75 |
| MIMAT0004897 | mmu-miR-654-5p | 8 | __...... | 3 | 75 |
| MIMAT0001950 | ptc-miR168b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001949 | ptc-miR168a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015208 | zma-miR156k-3p | 3 | ......__ | 8 | 75 |
| MIMAT0001727 | zma-miR168b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001726 | zma-miR168a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001681 | gma-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0001666 | sof-miR168b | 1 | ......__ | 6 | 75 |
| MIMAT0001665 | sof-miR168a | 1 | ......__ | 6 | 75 |
| MIMAT0001452 | sbi-miR168 | 1 | ......__ | 6 | 75 |
| MIMAT0001045 | osa-miR168a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000206 | ath-miR173-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000199 | ath-miR168b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000198 | ath-miR168a-5p | 1 | ......__ | 6 | 75 |
