| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgtgggg | 8 | ||
| MIMAT0031551 | ppe-miR8128-3p | 1 | ........ | 8 | 100 |
| MIMAT0035750 | rno-miR-5132-5p | 1 | _....... | 7 | 87 |
| MIMAT0023265 | osa-miR5797 | 1 | ......._ | 7 | 87 |
| MIMAT0020763 | bdi-miR5054 | 8 | _....... | 2 | 87 |
| MIMAT0020643 | mmu-miR-5132-5p | 2 | _....... | 8 | 87 |
| MIMAT0018101 | hsa-miR-3677-3p | 2 | ......._ | 8 | 87 |
| MIMAT0016238 | ppy-miR-1909 | 1 | _....... | 7 | 87 |
| MIMAT0019189 | rlcv-miR-rL1-22-5p | 1 | _....... | 7 | 87 |
| MIMAT0027492 | hsa-miR-6796-5p | 1 | .t...... | 8 | 87 |
| MIMAT0012897 | eca-miR-1905a | 8 | ......t. | 1 | 87 |
| MIMAT0007457 | gga-miR-1594 | 1 | .g...... | 8 | 87 |
| MIMAT0037129 | ata-miR9672-3p | 8 | ......__ | 3 | 75 |
| MIMAT0036984 | tae-miR9672b | 8 | ......__ | 3 | 75 |
| MIMAT0036566 | tch-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0036251 | chi-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0035790 | tae-miR9672a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0034905 | efu-miR-9272 | 7 | __...... | 2 | 75 |
| MIMAT0034860 | efu-miR-9246a | 8 | _......_ | 3 | 75 |
| MIMAT0033708 | pxy-miR-8498 | 1 | __...... | 6 | 75 |
| MIMAT0031616 | bbe-miR-2058-3p | 3 | __...... | 8 | 75 |
| MIMAT0029056 | gga-miR-7451-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028982 | oan-miR-7417-5p | 8 | __...... | 3 | 75 |
| MIMAT0031050 | mdo-miR-92a-2-5p | 3 | __...... | 8 | 75 |
| MIMAT0028740 | mdo-miR-7364-5p | 1 | __...... | 6 | 75 |
| MIMAT0028186 | dev-miR-D13-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028168 | hcmv-miR-US29-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028084 | mmu-miR-7089-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028076 | mmu-miR-7085-5p | 3 | __...... | 8 | 75 |
| MIMAT0027910 | mmu-miR-7003-5p | 2 | __...... | 7 | 75 |
| MIMAT0027862 | mmu-miR-6980-5p | 1 | __...... | 6 | 75 |
| MIMAT0027606 | hsa-miR-6853-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027385 | hsa-miR-6742-5p | 2 | __...... | 7 | 75 |
| MIMAT0025825 | gga-miR-6622-3p | 2 | __...... | 7 | 75 |
| MIMAT0025332 | pde-miR396 | 7 | _......_ | 2 | 75 |
| MIMAT0025311 | prv-miR-LLT8 | 1 | __...... | 6 | 75 |
| MIMAT0024575 | bta-miR-4286 | 7 | __...... | 2 | 75 |
| MIMAT0027114 | mml-miR-1296-3p | 3 | __...... | 8 | 75 |
| MIMAT0024259 | ggo-miR-3151 | 2 | __...... | 7 | 75 |
| MIMAT0024196 | ggo-miR-491 | 2 | __...... | 7 | 75 |
| MIMAT0024031 | ptr-miR-3151 | 2 | __...... | 7 | 75 |
| MIMAT0023539 | ame-miR-6000a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0023465 | hco-miR-5961 | 7 | ......__ | 2 | 75 |
| MIMAT0023451 | hco-miR-5949 | 1 | _......_ | 6 | 75 |
| MIMAT0023432 | hco-miR-5937 | 3 | ......__ | 8 | 75 |
| MIMAT0022079 | aca-miR-5453 | 8 | __...... | 3 | 75 |
| MIMAT0020640 | mmu-miR-5129-5p | 3 | __...... | 8 | 75 |
| MIMAT0020592 | ssc-miR-491 | 2 | __...... | 7 | 75 |
| MIMAT0019904 | hsa-miR-4758-3p | 8 | __...... | 3 | 75 |
| MIMAT0019622 | pma-miR-4589 | 1 | __...... | 6 | 75 |
| MIMAT0019356 | mmu-miR-3971 | 8 | __...... | 3 | 75 |
| MIMAT0018999 | hsa-miR-4472 | 2 | __...... | 7 | 75 |
| MIMAT0018966 | hsa-miR-4447 | 2 | __...... | 7 | 75 |
| MIMAT0018958 | hsa-miR-4440 | 3 | ......__ | 8 | 75 |
| MIMAT0018323 | gma-miR4404 | 3 | ......__ | 8 | 75 |
| MIMAT0018790 | tca-miR-3859-5p | 7 | __...... | 2 | 75 |
| MIMAT0018590 | ame-miR-3724 | 2 | ......__ | 7 | 75 |
| MIMAT0017976 | ssc-miR-1296-3p | 3 | __...... | 8 | 75 |
| MIMAT0016916 | hsa-miR-4286 | 7 | __...... | 2 | 75 |
| MIMAT0016199 | ppy-miR-1275 | 1 | __...... | 6 | 75 |
| MIMAT0016159 | ppy-miR-1224-3p | 6 | __...... | 1 | 75 |
| MIMAT0016153 | ppy-miR-1204 | 1 | ......__ | 6 | 75 |
| MIMAT0015911 | ppy-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0015578 | bmo-miR-3383-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015024 | hsa-miR-3151-5p | 2 | __...... | 7 | 75 |
| MIMAT0031032 | tgu-miR-92-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0013846 | bta-miR-2888 | 2 | __...... | 7 | 75 |
| MIMAT0013116 | eca-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0013003 | eca-miR-1204 | 1 | ......__ | 6 | 75 |
| MIMAT0019167 | bfl-miR-2058-3p | 3 | __...... | 8 | 75 |
| MIMAT0009332 | bta-miR-491 | 2 | __...... | 7 | 75 |
| MIMAT0007996 | ptr-miR-1275 | 1 | __...... | 6 | 75 |
| MIMAT0007958 | ptr-miR-1204 | 1 | ......__ | 6 | 75 |
| MIMAT0006501 | mml-miR-662 | 7 | _......_ | 2 | 75 |
| MIMAT0006352 | mml-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0026837 | mml-miR-194-3p | 3 | __...... | 8 | 75 |
| MIMAT0026809 | mml-miR-92a-5p | 3 | __...... | 8 | 75 |
| MIMAT0007727 | gga-miR-1809 | 2 | _......_ | 7 | 75 |
| MIMAT0015245 | cin-miR-1473-5p | 7 | _......_ | 2 | 75 |
| MIMAT0006857 | oan-miR-92a-1-5p | 3 | __...... | 8 | 75 |
| MIMAT0005929 | hsa-miR-1275 | 1 | __...... | 6 | 75 |
| MIMAT0005868 | hsa-miR-1204 | 1 | ......__ | 6 | 75 |
| MIMAT0005581 | mml-miR-1227 | 1 | __...... | 6 | 75 |
| MIMAT0022941 | hsa-miR-1227-5p | 1 | __...... | 6 | 75 |
| MIMAT0005571 | mml-miR-1224-3p | 6 | __...... | 1 | 75 |
| MIMAT0005569 | ptr-miR-1224-3p | 6 | __...... | 1 | 75 |
| MIMAT0005553 | mcmv-miR-M95-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003901 | ppt-miR1212 | 1 | _......_ | 6 | 75 |
| MIMAT0003486 | mmu-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0003891 | mmu-miR-770-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017231 | mmu-miR-1224-3p | 6 | __...... | 1 | 75 |
| MIMAT0026637 | hsa-miR-1296-3p | 3 | __...... | 8 | 75 |
| MIMAT0005459 | hsa-miR-1224-3p | 6 | __...... | 1 | 75 |
| MIMAT0003325 | hsa-miR-662 | 7 | _......_ | 2 | 75 |
| MIMAT0002807 | hsa-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0001587 | osa-miR438 | 8 | _......_ | 3 | 75 |
| MIMAT0017108 | rno-miR-92a-2-5p | 3 | __...... | 8 | 75 |
| MIMAT0004635 | mmu-miR-92a-2-5p | 3 | __...... | 8 | 75 |
| MIMAT0004508 | hsa-miR-92a-2-5p | 3 | __...... | 8 | 75 |
