| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgatggac | 8 | ||
| MIMAT0019185 | rlcv-miR-rL1-17-5p | 1 | ........ | 8 | 100 |
| MIMAT0034179 | gra-miR8752 | 1 | ......._ | 7 | 87 |
| MIMAT0033368 | str-miR-7880n-5p | 1 | ......._ | 7 | 87 |
| MIMAT0031009 | hsa-miR-8082 | 1 | ......._ | 7 | 87 |
| MIMAT0030972 | stu-miR8048-3p | 2 | _....... | 8 | 87 |
| MIMAT0029091 | gga-miR-7468-3p | 1 | ......._ | 7 | 87 |
| MIMAT0025681 | gga-miR-6589-5p | 1 | ......._ | 7 | 87 |
| MIMAT0025652 | gga-miR-6572-3p | 2 | _....... | 8 | 87 |
| MIMAT0021371 | mtr-miR5298c | 1 | ......._ | 7 | 87 |
| MIMAT0021370 | mtr-miR5298b | 1 | ......._ | 7 | 87 |
| MIMAT0017627 | aly-miR842-5p | 2 | ......._ | 8 | 87 |
| MIMAT0015000 | hsa-miR-3134 | 1 | ......._ | 7 | 87 |
| MIMAT0012317 | dps-miR-2527 | 1 | ......._ | 7 | 87 |
| MIMAT0011271 | sme-miR-2171 | 2 | ......._ | 8 | 87 |
| MIMAT0007205 | oan-miR-1400-5p | 1 | _....... | 7 | 87 |
| MIMAT0005429 | cre-miR1170.1 | 8 | _....... | 2 | 87 |
| MIMAT0034168 | gra-miR7494d | 1 | .c...... | 8 | 87 |
| MIMAT0019626 | pma-miR-4593 | 8 | ......c. | 1 | 87 |
| MIMAT0017750 | esi-miR3466-3p | 1 | ......t. | 8 | 87 |
| MIMAT0009126 | pta-miR1309 | 1 | ......c. | 8 | 87 |
| MIMAT0036203 | chi-miR-3955-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035812 | tae-miR9666b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035784 | tae-miR9666c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035218 | dme-miR-9377-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034606 | eca-miR-9061 | 1 | ......__ | 6 | 75 |
| MIMAT0034587 | eca-miR-9044 | 1 | ......__ | 6 | 75 |
| MIMAT0034458 | eca-miR-8930 | 8 | _......_ | 3 | 75 |
| MIMAT0034386 | cfa-miR-8884 | 3 | ......__ | 8 | 75 |
| MIMAT0034208 | gra-miR8770 | 2 | ......__ | 7 | 75 |
| MIMAT0034180 | gra-miR166d | 1 | ......__ | 6 | 75 |
| MIMAT0034120 | gra-miR8726 | 2 | _......_ | 7 | 75 |
| MIMAT0034103 | gra-miR8714 | 1 | __...... | 6 | 75 |
| MIMAT0033951 | atr-miR2950 | 7 | _......_ | 2 | 75 |
| MIMAT0033859 | atr-miR8576 | 8 | ......__ | 3 | 75 |
| MIMAT0033283 | ppc-miR-8360-3p | 7 | __...... | 2 | 75 |
| MIMAT0032923 | ppc-miR-8234-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030945 | stu-miR8035 | 6 | _......_ | 1 | 75 |
| MIMAT0030930 | stu-miR7980b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030670 | prd-miR-7917-5p | 8 | __...... | 3 | 75 |
| MIMAT0030445 | bta-miR-7863 | 1 | __...... | 6 | 75 |
| MIMAT0030157 | bdi-miR7717a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029309 | mes-miR2950 | 7 | _......_ | 2 | 75 |
| MIMAT0028963 | oan-miR-7408-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028862 | mdo-miR-7386m-5p | 2 | __...... | 7 | 75 |
| MIMAT0028726 | mdo-miR-7357-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028352 | mml-miR-7196-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028212 | hsa-miR-7151-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026404 | sbi-miR6220-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028093 | mmu-miR-7093-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027669 | hsa-miR-6884-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025795 | gga-miR-6689-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025759 | gga-miR-6658-3p | 2 | __...... | 7 | 75 |
| MIMAT0025702 | gga-miR-6608-5p | 1 | ......__ | 6 | 75 |
| MIMAT0024546 | cca-miR6109 | 1 | __...... | 6 | 75 |
| MIMAT0024321 | mml-miR-1262-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026462 | hhv6b-miR-Ro6-4-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023271 | osa-miR5802 | 1 | __...... | 6 | 75 |
| MIMAT0021577 | asu-miR-5357-3p | 2 | __...... | 7 | 75 |
| MIMAT0020165 | dme-miR-4951-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019662 | pma-miR-4628 | 8 | __...... | 3 | 75 |
| MIMAT0019580 | pma-miR-4548 | 6 | _......_ | 1 | 75 |
| MIMAT0019245 | oar-miR-3955-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019073 | hsa-miR-4534 | 2 | _......_ | 7 | 75 |
| MIMAT0018309 | gma-miR4394 | 2 | __...... | 7 | 75 |
| MIMAT0027036 | hsa-miR-3912-5p | 8 | __...... | 3 | 75 |
| MIMAT0018009 | vvi-miR2950-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017784 | esi-miR3454d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017770 | esi-miR3454e-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017752 | esi-miR3454c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017748 | esi-miR3454a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017746 | esi-miR3454g-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017652 | aly-miR861-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015530 | bmo-miR-3343 | 8 | _......_ | 3 | 75 |
| MIMAT0015384 | bmo-miR-3206 | 8 | _......_ | 3 | 75 |
| MIMAT0014465 | tgu-miR-146a-3p | 7 | __...... | 2 | 75 |
| MIMAT0013796 | bmo-miR-2857 | 1 | ......__ | 6 | 75 |
| MIMAT0012732 | mdv2-miR-M32-5p | 8 | _......_ | 3 | 75 |
| MIMAT0011981 | bta-miR-2417 | 2 | _......_ | 7 | 75 |
| MIMAT0011437 | cel-miR-2211-5p | 8 | _......_ | 3 | 75 |
| MIMAT0009442 | mmu-miR-1969 | 3 | _......_ | 8 | 75 |
| MIMAT0007736 | gga-miR-146c-3p | 7 | __...... | 2 | 75 |
| MIMAT0007403 | gga-miR-1550-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007393 | gma-miR1531-3p | 8 | __...... | 3 | 75 |
| MIMAT0032033 | gma-miR1531-5p | 3 | __...... | 8 | 75 |
| MIMAT0005423 | cre-miR1166.2 | 8 | __...... | 3 | 75 |
| MIMAT0004453 | mdv2-miR-M15-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004306 | ath-miR861-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012127 | sme-miR-756-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003744 | hsv1-miR-H1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003905 | ppt-miR1216 | 1 | ......__ | 6 | 75 |
| MIMAT0002189 | kshv-miR-K12-6-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026513 | gga-miR-217-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017128 | rno-miR-141-5p | 6 | _......_ | 1 | 75 |
