| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgatggtt | 8 | ||
| MIMAT0034587 | eca-miR-9044 | 1 | ........ | 8 | 100 |
| MIMAT0002189 | kshv-miR-K12-6-3p | 1 | ........ | 8 | 100 |
| MIMAT0035283 | gsa-miR-7-3p | 8 | _....... | 2 | 87 |
| MIMAT0035054 | efu-miR-181a | 7 | _....... | 1 | 87 |
| MIMAT0034208 | gra-miR8770 | 2 | ......._ | 8 | 87 |
| MIMAT0030996 | hsa-miR-8069 | 2 | _....... | 8 | 87 |
| MIMAT0017750 | esi-miR3466-3p | 1 | ......._ | 7 | 87 |
| MIMAT0003905 | ppt-miR1216 | 1 | ......._ | 7 | 87 |
| MIMAT0022929 | hsa-miR-758-5p | 1 | _....... | 7 | 87 |
| MIMAT0004559 | hsa-miR-181c-3p | 7 | _....... | 1 | 87 |
| MIMAT0020774 | cel-miR-77-5p | 1 | _....... | 7 | 87 |
| MIMAT0034606 | eca-miR-9061 | 1 | ......c. | 8 | 87 |
| MIMAT0033859 | atr-miR8576 | 8 | ......c. | 1 | 87 |
| MIMAT0033368 | str-miR-7880n-5p | 1 | ......a. | 8 | 87 |
| MIMAT0027785 | mmu-miR-6942-3p | 1 | .t...... | 8 | 87 |
| MIMAT0027721 | mmu-miR-6910-3p | 1 | .c...... | 8 | 87 |
| MIMAT0025659 | gga-miR-6576-5p | 1 | .c...... | 8 | 87 |
| MIMAT0024321 | mml-miR-1262-3p | 1 | ......g. | 8 | 87 |
| MIMAT0024127 | ggo-miR-584 | 1 | .t...... | 8 | 87 |
| MIMAT0016027 | ppy-miR-584 | 1 | .t...... | 8 | 87 |
| MIMAT0015000 | hsa-miR-3134 | 1 | ......a. | 8 | 87 |
| MIMAT0012317 | dps-miR-2527 | 1 | ......a. | 8 | 87 |
| MIMAT0008257 | ptr-miR-584 | 1 | .t...... | 8 | 87 |
| MIMAT0006446 | mml-miR-584-5p | 1 | .t...... | 8 | 87 |
| MIMAT0003249 | hsa-miR-584-5p | 1 | .t...... | 8 | 87 |
| MIMAT0036838 | oha-miR-218-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0036837 | oha-miR-218-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0036759 | oha-miR-181a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036203 | chi-miR-3955-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036197 | chi-miR-380-5p | 1 | __...... | 6 | 75 |
| MIMAT0036004 | chi-miR-181c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035812 | tae-miR9666b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035784 | tae-miR9666c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035218 | dme-miR-9377-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034386 | cfa-miR-8884 | 3 | ......__ | 8 | 75 |
| MIMAT0034180 | gra-miR166d | 1 | ......__ | 6 | 75 |
| MIMAT0034179 | gra-miR8752 | 1 | ......__ | 6 | 75 |
| MIMAT0032525 | ssa-miR-218-3p | 3 | __...... | 8 | 75 |
| MIMAT0032422 | ssa-miR-181a-5-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032421 | ssa-miR-181a-4-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032419 | ssa-miR-181a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032418 | ssa-miR-181a-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032400 | ssa-miR-15c-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0031009 | hsa-miR-8082 | 1 | ......__ | 6 | 75 |
| MIMAT0030673 | prd-miR-7907b-3p | 8 | __...... | 3 | 75 |
| MIMAT0030558 | prd-miR-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0029091 | gga-miR-7468-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028883 | mdo-miR-7392-3p | 8 | __...... | 3 | 75 |
| MIMAT0028769 | mdo-miR-15c-3p | 8 | __...... | 3 | 75 |
| MIMAT0031111 | mdo-miR-218-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0028203 | dre-miR-7146-5p | 8 | __...... | 3 | 75 |
| MIMAT0026351 | bma-miR-5853 | 1 | _......_ | 6 | 75 |
| MIMAT0028057 | mmu-miR-7075-3p | 7 | __...... | 2 | 75 |
| MIMAT0027753 | mmu-miR-6926-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027669 | hsa-miR-6884-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025795 | gga-miR-6689-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025763 | gga-miR-6662-3p | 2 | __...... | 7 | 75 |
| MIMAT0025702 | gga-miR-6608-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025681 | gga-miR-6589-5p | 1 | ......__ | 6 | 75 |
| MIMAT0024369 | ppy-miR-1193 | 3 | _......_ | 8 | 75 |
| MIMAT0024256 | ggo-miR-1193 | 3 | _......_ | 8 | 75 |
| MIMAT0023802 | cgr-miR-181c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0023798 | cgr-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022840 | sha-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022587 | ola-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022326 | cin-miR-5601-3p | 2 | __...... | 7 | 75 |
| MIMAT0022226 | mtr-miR5554c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022208 | mtr-miR5554b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022200 | mtr-miR5554a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022149 | osa-miR5515 | 3 | _......_ | 8 | 75 |
| MIMAT0021400 | rmi-miR-5327 | 3 | __...... | 8 | 75 |
| MIMAT0021371 | mtr-miR5298c | 1 | ......__ | 6 | 75 |
| MIMAT0021370 | mtr-miR5298b | 1 | ......__ | 6 | 75 |
| MIMAT0020165 | dme-miR-4951-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019626 | pma-miR-4593 | 8 | ......__ | 3 | 75 |
| MIMAT0019530 | pma-miR-218a-3p | 1 | __...... | 6 | 75 |
| MIMAT0019487 | pma-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019269 | oar-miR-1193-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019253 | oar-miR-380-5p | 1 | __...... | 6 | 75 |
| MIMAT0019245 | oar-miR-3955-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018675 | tca-miR-3824-3p | 1 | __...... | 6 | 75 |
| MIMAT0017969 | ssc-miR-218-3p | 1 | __...... | 6 | 75 |
| MIMAT0016698 | cin-miR-4110-5p | 6 | __...... | 1 | 75 |
| MIMAT0017838 | rno-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0015712 | ssc-miR-299 | 1 | __...... | 6 | 75 |
| MIMAT0017724 | aly-miR3445-5p.1 | 8 | __...... | 3 | 75 |
| MIMAT0017627 | aly-miR842-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015049 | hsa-miR-1193 | 3 | _......_ | 8 | 75 |
| MIMAT0031043 | tgu-miR-181a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0014641 | tgu-miR-181a-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019185 | rlcv-miR-rL1-17-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013796 | bmo-miR-2857 | 1 | ......__ | 6 | 75 |
| MIMAT0013751 | bmo-miR-2837 | 2 | _......_ | 7 | 75 |
| MIMAT0012341 | dps-miR-2542-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011271 | sme-miR-2171 | 2 | ......__ | 7 | 75 |
| MIMAT0019155 | sko-miR-34-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009126 | pta-miR1309 | 1 | ......__ | 6 | 75 |
| MIMAT0006769 | cel-miR-1829a-3p | 7 | __...... | 2 | 75 |
| MIMAT0020359 | cel-miR-1820-3p | 6 | __...... | 1 | 75 |
| MIMAT0026909 | mml-miR-758-5p | 1 | __...... | 6 | 75 |
| MIMAT0026866 | mml-miR-380-5p | 1 | __...... | 6 | 75 |
| MIMAT0031080 | mml-miR-218-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0007456 | gga-miR-1593 | 6 | _......_ | 1 | 75 |
| MIMAT0007403 | gga-miR-1550-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006834 | oan-miR-181a-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005431 | cre-miR1173 | 1 | __...... | 6 | 75 |
| MIMAT0005308 | rno-miR-380-5p | 1 | __...... | 6 | 75 |
| MIMAT0026680 | mdo-miR-218-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0003925 | mdv1-miR-M4-3p | 2 | __...... | 7 | 75 |
| MIMAT0005461 | xtr-miR-181a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003626 | xtr-miR-181a-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003916 | ppt-miR1221-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032007 | dre-miR-181a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003006 | tni-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003005 | fru-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002636 | ppa-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002634 | mne-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002632 | lla-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002629 | ggo-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002627 | ppy-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002624 | ptr-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002622 | mml-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026589 | mml-miR-218-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0015159 | osa-miR396e-3p | 1 | __...... | 6 | 75 |
| MIMAT0001282 | dre-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0001150 | gga-miR-181a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026518 | gga-miR-218-3p | 2 | __...... | 7 | 75 |
| MIMAT0026513 | gga-miR-217-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004740 | rno-miR-218a-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0000884 | rno-miR-181a-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017137 | rno-miR-181c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0000744 | mmu-miR-380-5p | 1 | __...... | 6 | 75 |
| MIMAT0017068 | mmu-miR-181c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005444 | mmu-miR-218-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0000660 | mmu-miR-181a-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004566 | hsa-miR-218-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0004565 | hsa-miR-218-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0000270 | hsa-miR-181a-3p | 6 | _......_ | 1 | 75 |
