| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgcctcgg | 8 | ||
| MIMAT0029908 | mmu-miR-7689-5p | 8 | ........ | 1 | 100 |
| MIMAT0032969 | ppc-miR-8251-3p | 1 | ......._ | 7 | 87 |
| MIMAT0022367 | mmu-miR-5620-5p | 8 | ......._ | 2 | 87 |
| MIMAT0018832 | tca-miR-3870-5p | 8 | ......._ | 2 | 87 |
| MIMAT0013496 | mtr-miR2675 | 7 | ......._ | 1 | 87 |
| MIMAT0013288 | mtr-miR2111g-3p | 2 | _....... | 8 | 87 |
| MIMAT0026808 | mml-miR-33b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0017328 | mmu-miR-1188-3p | 8 | _....... | 2 | 87 |
| MIMAT0034367 | cfa-miR-8870 | 1 | ......t. | 8 | 87 |
| MIMAT0015576 | bmo-miR-3382-3p | 1 | ......c. | 8 | 87 |
| MIMAT0036897 | oha-miR-31-5p | 7 | ......__ | 2 | 75 |
| MIMAT0036809 | oha-miR-202-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036081 | chi-miR-2290 | 2 | ......__ | 7 | 75 |
| MIMAT0035830 | bra-miR162-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035070 | efu-miR-9329 | 3 | ......__ | 8 | 75 |
| MIMAT0034625 | eca-miR-9080 | 8 | __...... | 3 | 75 |
| MIMAT0034623 | eca-miR-9078 | 8 | _......_ | 3 | 75 |
| MIMAT0034376 | cfa-miR-8876 | 2 | ......__ | 7 | 75 |
| MIMAT0034281 | cfa-miR-8791a | 2 | __...... | 7 | 75 |
| MIMAT0034033 | gra-miR8663b | 7 | ......__ | 2 | 75 |
| MIMAT0033264 | ppc-miR-8364l-5p | 1 | __...... | 6 | 75 |
| MIMAT0033178 | ppc-miR-8319-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033121 | ppc-miR-8301-5p | 8 | __...... | 3 | 75 |
| MIMAT0031385 | aly-miR2111c-3p | 3 | __...... | 8 | 75 |
| MIMAT0031281 | stu-miR162b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031279 | stu-miR162a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031015 | hsa-miR-8088 | 1 | __...... | 6 | 75 |
| MIMAT0030281 | bdi-miR7766-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028694 | mdo-miR-7342-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028492 | mdo-miR-7263-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028178 | dev-miR-D8-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027971 | mmu-miR-7033-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027850 | mmu-miR-6974-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027827 | mmu-miR-6963-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027575 | hsa-miR-6836-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027559 | hsa-miR-6829-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027483 | hsa-miR-6791-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027463 | hsa-miR-6781-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027457 | hsa-miR-6778-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025666 | gga-miR-6579-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025654 | gga-miR-6573-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025140 | mmu-miR-6391 | 7 | ......__ | 2 | 75 |
| MIMAT0024566 | cca-miR6118-3p | 8 | __...... | 3 | 75 |
| MIMAT0024385 | ppy-miR-1273e | 6 | ......__ | 1 | 75 |
| MIMAT0024339 | mml-miR-1304 | 8 | _......_ | 3 | 75 |
| MIMAT0024258 | ggo-miR-3612 | 8 | ......__ | 3 | 75 |
| MIMAT0021850 | aca-miR-202-3p.1 | 7 | ......__ | 2 | 75 |
| MIMAT0020199 | dme-miR-4972-5p | 1 | __...... | 6 | 75 |
| MIMAT0018807 | tca-miR-252b-3p | 2 | __...... | 7 | 75 |
| MIMAT0018680 | tca-miR-3826-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018587 | ame-miR-3800 | 6 | _......_ | 1 | 75 |
| MIMAT0018515 | ame-miR-3747a | 6 | _......_ | 1 | 75 |
| MIMAT0017989 | hsa-miR-3612 | 8 | ......__ | 3 | 75 |
| MIMAT0017855 | rno-miR-1188-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016371 | bra-miR2111b-3p | 3 | __...... | 8 | 75 |
| MIMAT0016369 | bra-miR2111a-3p | 3 | __...... | 8 | 75 |
| MIMAT0016236 | ppy-miR-1827 | 7 | ......__ | 2 | 75 |
| MIMAT0016224 | ppy-miR-1304 | 8 | _......_ | 3 | 75 |
| MIMAT0016083 | ppy-miR-650 | 8 | ......__ | 3 | 75 |
| MIMAT0017660 | aly-miR2111b-3p | 3 | __...... | 8 | 75 |
| MIMAT0017658 | aly-miR2111a-3p | 3 | __...... | 8 | 75 |
| MIMAT0017447 | aly-miR162b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017445 | aly-miR162a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015458 | bmo-miR-3273 | 1 | ......__ | 6 | 75 |
| MIMAT0015388 | bmo-miR-3209 | 6 | _......_ | 1 | 75 |
| MIMAT0019207 | hsa-miR-3152-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014869 | mmu-miR-3080-3p | 2 | __...... | 7 | 75 |
| MIMAT0017388 | csi-miR162-5p | 8 | ......__ | 3 | 75 |
| MIMAT0013782 | bmo-miR-306b | 7 | ......__ | 2 | 75 |
| MIMAT0013632 | bmo-miR-2760-5p | 6 | _......_ | 1 | 75 |
| MIMAT0013624 | bmo-miR-2756-3p | 3 | __...... | 8 | 75 |
| MIMAT0013514 | mtr-miR2680e | 2 | __...... | 7 | 75 |
| MIMAT0013513 | mtr-miR2680d | 2 | __...... | 7 | 75 |
| MIMAT0013512 | mtr-miR2680c | 2 | __...... | 7 | 75 |
| MIMAT0013511 | mtr-miR2680b | 2 | __...... | 7 | 75 |
| MIMAT0013510 | mtr-miR2680a | 2 | __...... | 7 | 75 |
| MIMAT0026928 | mtr-miR2111m-3p | 3 | __...... | 8 | 75 |
| MIMAT0011783 | bna-miR2111a-3p | 3 | __...... | 8 | 75 |
| MIMAT0011781 | bna-miR2111b-3p | 3 | __...... | 8 | 75 |
| MIMAT0011153 | ath-miR2111b-3p | 3 | __...... | 8 | 75 |
| MIMAT0011151 | ath-miR2111a-3p | 3 | __...... | 8 | 75 |
| MIMAT0010074 | osa-miR2106 | 6 | __...... | 1 | 75 |
| MIMAT0008301 | ptr-miR-650 | 8 | ......__ | 3 | 75 |
| MIMAT0008052 | ptr-miR-1827 | 7 | ......__ | 2 | 75 |
| MIMAT0026917 | hsa-miR-1910-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006775 | cel-miR-1833 | 6 | _......_ | 1 | 75 |
| MIMAT0006767 | hsa-miR-1827 | 7 | ......__ | 2 | 75 |
| MIMAT0006490 | mml-miR-650c | 8 | ......__ | 3 | 75 |
| MIMAT0006489 | mml-miR-650b | 8 | ......__ | 3 | 75 |
| MIMAT0006488 | mml-miR-650a | 8 | ......__ | 3 | 75 |
| MIMAT0007590 | gga-miR-1698 | 6 | _......_ | 1 | 75 |
| MIMAT0026758 | oan-miR-1389-5p | 1 | __...... | 6 | 75 |
| MIMAT0007035 | oan-miR-1370 | 8 | __...... | 3 | 75 |
| MIMAT0006917 | oan-miR-1345 | 7 | __...... | 2 | 75 |
| MIMAT0005252 | smo-miR1096 | 2 | ......__ | 7 | 75 |
| MIMAT0012541 | mdv2-miR-M19-5p | 3 | __...... | 8 | 75 |
| MIMAT0004094 | mdo-miR-31-5p | 7 | ......__ | 2 | 75 |
| MIMAT0003499 | mmu-miR-709 | 7 | ......__ | 2 | 75 |
| MIMAT0003458 | mmu-miR-681 | 3 | _......_ | 8 | 75 |
| MIMAT0003355 | gga-miR-202-3p | 7 | ......__ | 2 | 75 |
| MIMAT0003320 | hsa-miR-650 | 8 | ......__ | 3 | 75 |
| MIMAT0003074 | tni-miR-202 | 7 | ......__ | 2 | 75 |
| MIMAT0003073 | fru-miR-202 | 7 | ......__ | 2 | 75 |
| MIMAT0001864 | dre-miR-202-3p | 7 | ......__ | 2 | 75 |
| MIMAT0001003 | ath-miR402 | 8 | _......_ | 3 | 75 |
| MIMAT0031877 | ath-miR162b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031876 | ath-miR162a-5p | 8 | ......__ | 3 | 75 |
