| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgctagac | 8 | ||
| MIMAT0019190 | rlcv-miR-rL1-25-5p | 1 | ........ | 8 | 100 |
| MIMAT0037059 | ssc-miR-9841-3p | 7 | ......._ | 1 | 87 |
| MIMAT0035413 | nve-miR-9452 | 1 | ......._ | 7 | 87 |
| MIMAT0004218 | ath-miR780.1 | 7 | ......._ | 1 | 87 |
| MIMAT0035086 | efu-miR-151 | 1 | .a...... | 8 | 87 |
| MIMAT0031013 | hsa-miR-8086 | 1 | ......t. | 8 | 87 |
| MIMAT0008282 | ptr-miR-621 | 8 | ......c. | 1 | 87 |
| MIMAT0003290 | hsa-miR-621 | 8 | ......c. | 1 | 87 |
| MIMAT0037072 | ssc-miR-9853-5p | 7 | __...... | 2 | 75 |
| MIMAT0035982 | chi-miR-151-3p | 1 | __...... | 6 | 75 |
| MIMAT0035776 | tae-miR9665-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035176 | efu-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0035175 | efu-miR-29b | 6 | ......__ | 1 | 75 |
| MIMAT0034941 | efu-miR-29c | 6 | ......__ | 1 | 75 |
| MIMAT0033329 | str-miR-7880i-5p | 7 | __...... | 2 | 75 |
| MIMAT0032673 | ssa-miR-725-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032538 | ssa-miR-221-3p | 8 | ......__ | 3 | 75 |
| MIMAT0031005 | hsa-miR-8078 | 7 | __...... | 2 | 75 |
| MIMAT0031186 | stu-miR7992-3p | 7 | __...... | 2 | 75 |
| MIMAT0030805 | prd-miR-7959b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030291 | bdi-miR7770-3p | 2 | __...... | 7 | 75 |
| MIMAT0029132 | ghr-miR7490 | 7 | __...... | 2 | 75 |
| MIMAT0028700 | mdo-miR-1251-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028569 | mdo-miR-7292-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028242 | mml-miR-1251-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026420 | sbi-miR6225-5p | 3 | __...... | 8 | 75 |
| MIMAT0026413 | sbi-miR6223-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025756 | gga-miR-6655-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025049 | rno-miR-344i | 7 | _......_ | 2 | 75 |
| MIMAT0024336 | mml-miR-3146 | 3 | ......__ | 8 | 75 |
| MIMAT0023783 | cgr-miR-151-3p | 1 | __...... | 6 | 75 |
| MIMAT0023182 | gma-miR5777 | 6 | ......__ | 1 | 75 |
| MIMAT0022086 | aca-miR-5459 | 2 | __...... | 7 | 75 |
| MIMAT0020646 | mmu-miR-5135 | 8 | __...... | 3 | 75 |
| MIMAT0018136 | pab-miR3704 | 7 | __...... | 2 | 75 |
| MIMAT0016857 | hsa-miR-4305 | 2 | __...... | 7 | 75 |
| MIMAT0016176 | ppy-miR-1251 | 8 | _......_ | 3 | 75 |
| MIMAT0016043 | ppy-miR-601 | 8 | __...... | 3 | 75 |
| MIMAT0015776 | ppy-miR-151a-3p | 1 | __...... | 6 | 75 |
| MIMAT0015018 | hsa-miR-3146 | 3 | ......__ | 8 | 75 |
| MIMAT0014948 | mmu-miR-3108-3p | 7 | __...... | 2 | 75 |
| MIMAT0014932 | mmu-miR-344f-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014824 | mmu-miR-1251-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014311 | aae-miR-282-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013883 | ssc-miR-151-3p | 1 | __...... | 6 | 75 |
| MIMAT0013870 | ssc-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0013550 | cte-miR-2693 | 8 | __...... | 3 | 75 |
| MIMAT0011561 | crm-miR-60-5p | 2 | _......_ | 7 | 75 |
| MIMAT0010020 | ppt-miR2081 | 2 | _......_ | 7 | 75 |
| MIMAT0009963 | bta-miR-1251 | 8 | _......_ | 3 | 75 |
| MIMAT0009734 | nve-miR-2022-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009720 | hma-miR-2022 | 3 | ......__ | 8 | 75 |
| MIMAT0009071 | dya-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0009026 | dwi-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0008883 | dsi-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0008792 | dse-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0008716 | dpe-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0008645 | dmo-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0008614 | dgr-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0008509 | der-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0008445 | dan-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0008270 | ptr-miR-601 | 8 | __...... | 3 | 75 |
| MIMAT0008045 | ptr-miR-151 | 1 | __...... | 6 | 75 |
| MIMAT0007977 | ptr-miR-1251 | 8 | _......_ | 3 | 75 |
| MIMAT0007815 | osa-miR1865-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006458 | mml-miR-601 | 8 | __...... | 3 | 75 |
| MIMAT0006213 | mml-miR-151-3p | 1 | __...... | 6 | 75 |
| MIMAT0007405 | gga-miR-1551-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005903 | hsa-miR-1251-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026738 | hsa-miR-1287-3p | 7 | _......_ | 2 | 75 |
| MIMAT0005153 | ppt-miR1042-3p | 7 | __...... | 2 | 75 |
| MIMAT0032010 | dre-miR-725-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003524 | bta-miR-151-3p | 1 | __...... | 6 | 75 |
| MIMAT0003518 | bta-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0013771 | hsa-miR-449c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003269 | hsa-miR-601 | 8 | __...... | 3 | 75 |
| MIMAT0026618 | hsa-miR-585-5p | 6 | ......__ | 1 | 75 |
| MIMAT0002368 | mne-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0002367 | lla-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0002366 | sla-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0002365 | mml-miR-29a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0002364 | ptr-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0002363 | ppy-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0002362 | ppa-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0002361 | age-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0002360 | ggo-miR-29a | 6 | ......__ | 1 | 75 |
| MIMAT0020918 | osa-miR444a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0001514 | aga-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0001246 | dps-miR-282 | 8 | _......_ | 3 | 75 |
| MIMAT0000757 | hsa-miR-151a-3p | 1 | __...... | 6 | 75 |
| MIMAT0000614 | rno-miR-151-3p | 1 | __...... | 6 | 75 |
| MIMAT0000161 | mmu-miR-151-3p | 1 | __...... | 6 | 75 |
