| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggcaacg | 8 | ||
| MIMAT0033125 | ppc-miR-8302-5p | 8 | _....... | 2 | 87 |
| MIMAT0025458 | hsa-miR-6501-5p | 8 | ......._ | 2 | 87 |
| MIMAT0024729 | nta-miR6144 | 1 | ......._ | 7 | 87 |
| MIMAT0013766 | bmo-miR-2845 | 8 | _....... | 2 | 87 |
| MIMAT0033148 | ppc-miR-8309-5p | 1 | ......t. | 8 | 87 |
| MIMAT0027518 | hsa-miR-6809-5p | 1 | ......g. | 8 | 87 |
| MIMAT0023360 | hco-miR-5906 | 1 | ......t. | 8 | 87 |
| MIMAT0022168 | osa-miR5533 | 8 | ......a. | 1 | 87 |
| MIMAT0036974 | bta-miR-3064 | 6 | ......__ | 1 | 75 |
| MIMAT0036786 | oha-miR-196b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036764 | oha-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036006 | chi-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0035738 | rno-miR-3064-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035621 | dvi-miR-9539-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035476 | sly-miR169e-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035314 | gsa-miR-31-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035107 | efu-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0034455 | eca-miR-8927 | 3 | ......__ | 8 | 75 |
| MIMAT0034287 | cfa-miR-8797 | 6 | ......__ | 1 | 75 |
| MIMAT0033845 | atr-miR8569 | 3 | ......__ | 8 | 75 |
| MIMAT0033809 | pxy-miR-2525-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033241 | ppc-miR-8286b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033231 | ppc-miR-8343-5p | 1 | ......__ | 6 | 75 |
| MIMAT0033078 | ppc-miR-8286a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032871 | ppc-miR-8219-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032808 | cel-miR-8197-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032457 | ssa-miR-196a-4-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032454 | ssa-miR-196a-1-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032427 | ssa-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031666 | bbe-miR-31-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030815 | prd-miR-7960-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030354 | hhi-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0032209 | lva-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032162 | pmi-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029788 | tgu-miR-7644-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029720 | cbn-miR-74d | 1 | ......__ | 6 | 75 |
| MIMAT0029719 | cbn-miR-73b | 1 | ......__ | 6 | 75 |
| MIMAT0029718 | cbn-miR-74a | 1 | ......__ | 6 | 75 |
| MIMAT0029716 | cbn-miR-74b | 1 | ......__ | 6 | 75 |
| MIMAT0029715 | cbn-miR-73a | 1 | ......__ | 6 | 75 |
| MIMAT0029714 | cbn-miR-72a | 1 | ......__ | 6 | 75 |
| MIMAT0029713 | cbn-miR-74c | 1 | ......__ | 6 | 75 |
| MIMAT0029640 | crm-miR-2225 | 1 | ......__ | 6 | 75 |
| MIMAT0029501 | ipu-miR-31 | 1 | ......__ | 6 | 75 |
| MIMAT0029439 | ipu-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0028289 | mml-miR-6790-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028278 | mml-miR-4703-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028190 | dev-miR-D17-5p | 2 | __...... | 7 | 75 |
| MIMAT0026386 | bma-miR-5882b | 3 | _......_ | 8 | 75 |
| MIMAT0026241 | ccr-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027948 | mmu-miR-7022-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025632 | gga-miR-3064-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025438 | pol-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025366 | ssc-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0025229 | ptc-miR6428 | 3 | ......__ | 8 | 75 |
| MIMAT0025038 | sma-miR-31-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027239 | pgi-miR482b | 8 | ......__ | 3 | 75 |
| MIMAT0027238 | pgi-miR482a | 8 | ......__ | 3 | 75 |
| MIMAT0024335 | mml-miR-891b-5p | 2 | __...... | 7 | 75 |
| MIMAT0024298 | ggo-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0024003 | cgr-miR-744-3p | 8 | _......_ | 3 | 75 |
| MIMAT0023832 | cgr-miR-196a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023805 | cgr-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0023685 | ame-miR-6061 | 8 | __...... | 3 | 75 |
| MIMAT0023605 | nta-miR482b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0023603 | sly-miR482c | 8 | ......__ | 3 | 75 |
| MIMAT0023601 | stu-miR482e-3p | 8 | ......__ | 3 | 75 |
| MIMAT0023284 | osa-miR5812 | 2 | __...... | 7 | 75 |
| MIMAT0022658 | ola-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0023033 | tur-miR-5728-3p | 7 | ......__ | 2 | 75 |
| MIMAT0023028 | tur-miR-5727-5p | 3 | _......_ | 8 | 75 |
| MIMAT0022299 | hsa-miR-5590-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022205 | mtr-miR2592bl-5p | 1 | ......__ | 6 | 75 |
| MIMAT0022197 | cel-miR-5553-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021811 | aca-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022671 | asu-miR-43c-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021453 | asu-miR-43c-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021451 | asu-miR-43b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021033 | hsa-miR-5006-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019933 | hsa-miR-4776-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019865 | hsa-miR-3064-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019733 | hsa-miR-4659b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019687 | osa-miR3982-3p | 7 | _......_ | 2 | 75 |
| MIMAT0019490 | pma-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0019432 | pma-miR-31 | 1 | ......__ | 6 | 75 |
| MIMAT0018997 | hsa-miR-4470 | 1 | ......__ | 6 | 75 |
| MIMAT0019232 | hsa-miR-4423-5p | 7 | _......_ | 2 | 75 |
| MIMAT0018666 | tca-miR-3820-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019223 | hsa-miR-3688-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016741 | cin-miR-4141-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016411 | cin-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016255 | sja-miR-31-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016126 | ppy-miR-891a | 2 | __...... | 7 | 75 |
| MIMAT0015438 | bmo-miR-3255 | 6 | ......__ | 1 | 75 |
| MIMAT0014991 | hsa-miR-3128 | 3 | ......__ | 8 | 75 |
| MIMAT0014425 | cqu-miR-31-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014276 | aae-miR-31 | 1 | ......__ | 6 | 75 |
| MIMAT0015356 | zma-miR399g-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012937 | eca-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0012798 | oan-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012406 | dps-miR-2569-5p | 8 | __...... | 3 | 75 |
| MIMAT0012042 | bta-miR-2457 | 6 | ......__ | 1 | 75 |
| MIMAT0011687 | ppc-miR-2261 | 3 | ......__ | 8 | 75 |
| MIMAT0011685 | ppc-miR-2259 | 1 | ......__ | 6 | 75 |
| MIMAT0011524 | crm-miR-73 | 1 | ......__ | 6 | 75 |
| MIMAT0011523 | crm-miR-74b | 1 | ......__ | 6 | 75 |
| MIMAT0011522 | crm-miR-74a | 1 | ......__ | 6 | 75 |
| MIMAT0011502 | cbr-miR-74b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0011498 | cbr-miR-2225-3p | 1 | ......__ | 6 | 75 |
| MIMAT0011464 | cbr-miR-73b | 1 | ......__ | 6 | 75 |
| MIMAT0009841 | cfa-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0009670 | spu-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0019158 | sko-miR-210-5p | 7 | _......_ | 2 | 75 |
| MIMAT0009630 | sko-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0009473 | bfl-miR-31-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009244 | bta-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0009104 | dya-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0009103 | dya-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0009044 | dwi-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0009037 | dwi-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008972 | dvi-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008967 | dvi-miR-31a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0008886 | dsi-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0008878 | dsi-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008825 | dse-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0008823 | dse-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008752 | dpe-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008723 | dpe-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0008677 | dmo-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0008639 | dmo-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008612 | dgr-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008585 | dgr-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0008519 | der-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0008481 | der-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008477 | dan-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0008469 | dan-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0008333 | ptr-miR-891a | 2 | __...... | 7 | 75 |
| MIMAT0008050 | ptr-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0026839 | mml-miR-196a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007618 | gga-miR-1720-3p | 3 | __...... | 8 | 75 |
| MIMAT0006121 | csa-miR-31 | 1 | ......__ | 6 | 75 |
| MIMAT0006092 | cin-miR-31 | 1 | ......__ | 6 | 75 |
| MIMAT0006020 | odi-miR-1469 | 1 | ......__ | 6 | 75 |
| MIMAT0005967 | osa-miR169r-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015244 | osa-miR1423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006976 | oan-miR-1421g-1-3p | 8 | __...... | 3 | 75 |
| MIMAT0006877 | oan-miR-196a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006831 | oan-miR-875-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005300 | rno-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0004398 | cre-miR915 | 1 | ......__ | 6 | 75 |
| MIMAT0004946 | hsa-miR-744-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004902 | hsa-miR-891a-5p | 2 | __...... | 7 | 75 |
| MIMAT0004870 | mmu-miR-453 | 8 | _......_ | 3 | 75 |
| MIMAT0004118 | mdo-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003610 | xtr-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017244 | mmu-miR-496a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0004820 | mmu-miR-744-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026627 | hsa-miR-656-5p | 8 | _......_ | 3 | 75 |
| MIMAT0004787 | rno-miR-543-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017207 | mmu-miR-543-5p | 8 | _......_ | 3 | 75 |
| MIMAT0002514 | ppy-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0002513 | mml-miR-182 | 3 | ......__ | 8 | 75 |
| MIMAT0031983 | dre-miR-196a-3p | 3 | __...... | 8 | 75 |
| MIMAT0015174 | zma-miR399f-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001271 | dre-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0001221 | dps-miR-31b | 1 | ......__ | 6 | 75 |
| MIMAT0001220 | dps-miR-31a | 1 | ......__ | 6 | 75 |
| MIMAT0004737 | rno-miR-196a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004618 | mmu-miR-196a-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000483 | cbr-miR-74a | 1 | ......__ | 6 | 75 |
| MIMAT0000482 | cbr-miR-73a | 1 | ......__ | 6 | 75 |
| MIMAT0000400 | dme-miR-31a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000389 | dme-miR-31b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020338 | cel-miR-249-5p | 2 | __...... | 7 | 75 |
| MIMAT0004562 | hsa-miR-196a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0000259 | hsa-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000211 | mmu-miR-182-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000046 | cel-miR-74-3p | 1 | ......__ | 6 | 75 |
| MIMAT0000045 | cel-miR-73-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015105 | cel-miR-64-3p | 3 | __...... | 8 | 75 |
