| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggtgacg | 8 | ||
| MIMAT0025791 | gga-miR-6685-3p | 1 | ........ | 8 | 100 |
| MIMAT0034788 | efu-miR-9202 | 1 | ......._ | 7 | 87 |
| MIMAT0034534 | eca-miR-8995 | 1 | _....... | 7 | 87 |
| MIMAT0029373 | lja-miR7546 | 2 | ......._ | 8 | 87 |
| MIMAT0029145 | ghr-miR7498 | 2 | ......._ | 8 | 87 |
| MIMAT0023665 | ame-miR-6043 | 2 | ......._ | 8 | 87 |
| MIMAT0022467 | gma-miR5679 | 2 | ......._ | 8 | 87 |
| MIMAT0034378 | cfa-miR-8878 | 1 | .c...... | 8 | 87 |
| MIMAT0027701 | mmu-miR-6900-3p | 1 | ......t. | 8 | 87 |
| MIMAT0025848 | hsa-miR-6511b-3p | 8 | ......g. | 1 | 87 |
| MIMAT0025479 | hsa-miR-6511a-3p | 8 | ......g. | 1 | 87 |
| MIMAT0036035 | chi-miR-197-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035355 | gsa-miR-9403-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035181 | efu-miR-9364 | 6 | ......__ | 1 | 75 |
| MIMAT0035050 | efu-miR-9323 | 6 | ......__ | 1 | 75 |
| MIMAT0034037 | gra-miR8666 | 2 | ......__ | 7 | 75 |
| MIMAT0031694 | bbe-miR-4868c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031624 | bbe-miR-2062-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030430 | hsa-miR-7855-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029868 | mmu-miR-7677-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029004 | oan-miR-7427-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028647 | mdo-miR-7323-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028559 | mdo-miR-7288-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028474 | mdo-miR-7254-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028006 | mmu-miR-7051-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027753 | mmu-miR-6926-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027659 | hsa-miR-6879-3p | 7 | _......_ | 2 | 75 |
| MIMAT0024559 | cca-miR6108f | 3 | ......__ | 8 | 75 |
| MIMAT0024180 | ggo-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0023398 | hco-miR-5922 | 3 | _......_ | 8 | 75 |
| MIMAT0022371 | mmu-miR-5622-5p | 7 | ......__ | 2 | 75 |
| MIMAT0022311 | cel-miR-356b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0022137 | osa-miR5504 | 2 | __...... | 7 | 75 |
| MIMAT0020710 | bdi-miR166g-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020651 | rgl-miR5140 | 3 | ......__ | 8 | 75 |
| MIMAT0020106 | bfl-miR-4868c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019593 | pma-miR-4561 | 3 | ......__ | 8 | 75 |
| MIMAT0018875 | tca-miR-3888-3p | 2 | __...... | 7 | 75 |
| MIMAT0016851 | hsa-miR-4299 | 3 | ......__ | 8 | 75 |
| MIMAT0016394 | cin-miR-3575-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016348 | ahy-miR3521 | 1 | ......__ | 6 | 75 |
| MIMAT0016311 | sja-miR-3502 | 1 | __...... | 6 | 75 |
| MIMAT0016290 | sja-miR-3485-5p | 7 | __...... | 2 | 75 |
| MIMAT0016196 | ppy-miR-1273a | 2 | _......_ | 7 | 75 |
| MIMAT0016162 | ppy-miR-1226 | 6 | ......__ | 1 | 75 |
| MIMAT0017729 | aly-miR3447-5p | 2 | __...... | 7 | 75 |
| MIMAT0019187 | rlcv-miR-rL1-19-3p | 8 | ......__ | 3 | 75 |
| MIMAT0012959 | eca-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0019169 | bfl-miR-2062-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009257 | bta-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0007775 | osa-miR1854-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006698 | cfa-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0006230 | mml-miR-197-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007665 | gga-miR-1758 | 6 | ......__ | 1 | 75 |
| MIMAT0007620 | gga-miR-1722-5p | 7 | _......_ | 2 | 75 |
| MIMAT0007580 | gga-miR-1689-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007535 | gga-miR-1656 | 6 | ......__ | 1 | 75 |
| MIMAT0007446 | gga-miR-1354 | 3 | ......__ | 8 | 75 |
| MIMAT0015263 | cin-miR-200-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005964 | osa-miR1430 | 1 | ......__ | 6 | 75 |
| MIMAT0006977 | oan-miR-1421h-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005861 | mml-miR-1240 | 6 | ......__ | 1 | 75 |
| MIMAT0005579 | mml-miR-1226 | 6 | ......__ | 1 | 75 |
| MIMAT0005578 | ptr-miR-1226 | 6 | ......__ | 1 | 75 |
| MIMAT0005577 | hsa-miR-1226-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005547 | mcmv-miR-M55-1 | 1 | ......__ | 6 | 75 |
| MIMAT0005274 | smo-miR1115-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005160 | ppt-miR1046-3p | 1 | ......__ | 6 | 75 |
| MIMAT0005135 | ppt-miR1032 | 2 | _......_ | 7 | 75 |
| MIMAT0020873 | dme-miR-976-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002604 | ppa-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0002603 | age-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0002602 | mne-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0002601 | ppy-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0002600 | ptr-miR-197 | 7 | ......__ | 2 | 75 |
| MIMAT0001577 | hcmv-miR-UL112-3p | 3 | __...... | 8 | 75 |
| MIMAT0001575 | hcmv-miR-UL22A-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020917 | osa-miR169i-5p.2 | 1 | ......__ | 6 | 75 |
| MIMAT0000227 | hsa-miR-197-3p | 7 | ......__ | 2 | 75 |
