| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcactag | 8 | ||
| MIMAT0033181 | ppc-miR-8320-3p | 1 | _....... | 7 | 87 |
| MIMAT0026313 | ccr-miR-726 | 1 | ......._ | 7 | 87 |
| MIMAT0025211 | ptc-miR6472 | 7 | ......._ | 1 | 87 |
| MIMAT0027316 | ppe-miR6285 | 7 | ......._ | 1 | 87 |
| MIMAT0021986 | aca-miR-726 | 1 | ......._ | 7 | 87 |
| MIMAT0017983 | hsa-miR-3606-5p | 8 | ......._ | 2 | 87 |
| MIMAT0016131 | ppy-miR-921 | 7 | _....... | 1 | 87 |
| MIMAT0016945 | rlcv-miR-rL1-23-5p | 1 | _....... | 7 | 87 |
| MIMAT0010130 | ebv-miR-BART21-5p | 1 | _....... | 7 | 87 |
| MIMAT0005230 | smo-miR1080 | 1 | ......._ | 7 | 87 |
| MIMAT0004971 | hsa-miR-921 | 7 | _....... | 1 | 87 |
| MIMAT0003754 | dre-miR-726 | 1 | ......._ | 7 | 87 |
| MIMAT0034355 | cfa-miR-8860 | 1 | .a...... | 8 | 87 |
| MIMAT0023993 | cgr-miR-653 | 1 | ......g. | 8 | 87 |
| MIMAT0017361 | rno-miR-653-3p | 1 | ......g. | 8 | 87 |
| MIMAT0026905 | mml-miR-653-3p | 1 | ......g. | 8 | 87 |
| MIMAT0017284 | mmu-miR-653-3p | 1 | ......g. | 8 | 87 |
| MIMAT0026625 | hsa-miR-653-3p | 1 | ......g. | 8 | 87 |
| MIMAT0037055 | ssc-miR-9837-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036767 | oha-miR-183-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036170 | chi-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036168 | chi-miR-34b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036110 | chi-miR-28-3p | 1 | __...... | 6 | 75 |
| MIMAT0035046 | efu-miR-34c | 3 | _......_ | 8 | 75 |
| MIMAT0034807 | efu-miR-9215b | 2 | __...... | 7 | 75 |
| MIMAT0034618 | eca-miR-9073 | 8 | ......__ | 3 | 75 |
| MIMAT0034004 | gra-miR8646 | 6 | _......_ | 1 | 75 |
| MIMAT0033979 | gra-miR8633 | 8 | ......__ | 3 | 75 |
| MIMAT0033762 | pxy-miR-7a | 8 | __...... | 3 | 75 |
| MIMAT0033454 | str-miR-37a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033354 | str-miR-86-5p | 8 | ......__ | 3 | 75 |
| MIMAT0033318 | str-miR-71-3p | 3 | _......_ | 8 | 75 |
| MIMAT0033007 | ppc-miR-71b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032431 | ssa-miR-183-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031762 | bma-miR-86 | 8 | ......__ | 3 | 75 |
| MIMAT0031612 | bbe-miR-2056-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030860 | stu-miR7987 | 2 | __...... | 7 | 75 |
| MIMAT0030502 | prd-miR-1175-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030466 | prd-miR-86-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030461 | prd-miR-71-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030339 | hhi-miR-7794 | 7 | ......__ | 2 | 75 |
| MIMAT0030301 | bdi-miR7775-3p | 6 | __...... | 1 | 75 |
| MIMAT0029751 | cbn-miR-785 | 8 | ......__ | 3 | 75 |
| MIMAT0029750 | cbn-miR-86 | 8 | ......__ | 3 | 75 |
| MIMAT0029609 | cbr-miR-785b | 8 | ......__ | 3 | 75 |
| MIMAT0029505 | ipu-miR-34c | 3 | _......_ | 8 | 75 |
| MIMAT0028989 | oan-miR-34b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028960 | oan-miR-7407-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028821 | mdo-miR-7382-3p | 1 | __...... | 6 | 75 |
| MIMAT0028735 | mdo-miR-7361-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028589 | mdo-miR-34b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028587 | mdo-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027577 | hsa-miR-6837-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025623 | gga-miR-6558-5p | 7 | ......__ | 2 | 75 |
| MIMAT0025018 | hme-miR-6311-3p | 6 | _......_ | 1 | 75 |
| MIMAT0024985 | hme-miR-71 | 3 | _......_ | 8 | 75 |
| MIMAT0024506 | mse-miR-6098 | 7 | _......_ | 2 | 75 |
| MIMAT0024407 | ppy-miR-3174 | 6 | _......_ | 1 | 75 |
| MIMAT0023930 | cgr-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023928 | cgr-miR-34b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023879 | cgr-miR-28-3p | 1 | __...... | 6 | 75 |
| MIMAT0023705 | hsa-miR-6080 | 7 | __...... | 2 | 75 |
| MIMAT0023698 | hsa-miR-6073 | 8 | _......_ | 3 | 75 |
| MIMAT0023667 | ame-miR-6045 | 2 | ......__ | 7 | 75 |
| MIMAT0023525 | ath-miR5999 | 3 | ......__ | 8 | 75 |
| MIMAT0023383 | hco-miR-5914 | 6 | _......_ | 1 | 75 |
| MIMAT0023350 | hco-miR-86 | 8 | ......__ | 3 | 75 |
| MIMAT0023041 | tur-miR-71-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022365 | mmu-miR-5619-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021944 | aca-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021940 | aca-miR-34a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0021479 | asu-miR-86-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021467 | asu-miR-71-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021018 | hsa-miR-4999-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019803 | hsa-miR-4704-5p | 3 | __...... | 8 | 75 |
| MIMAT0019000 | hsa-miR-4473 | 6 | __...... | 1 | 75 |
| MIMAT0018782 | tca-miR-3858-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027033 | tgu-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016646 | cin-miR-4078-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016608 | cin-miR-4060-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017814 | rno-miR-3553 | 7 | ......__ | 2 | 75 |
| MIMAT0016183 | ppy-miR-1257 | 6 | ......__ | 1 | 75 |
| MIMAT0015743 | ppy-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015391 | bmo-miR-3212 | 1 | ......__ | 6 | 75 |
| MIMAT0015051 | hsa-miR-3174 | 6 | _......_ | 1 | 75 |
| MIMAT0014447 | cel-miR-2953-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014401 | cqu-miR-71-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014221 | aae-miR-71-3p | 3 | _......_ | 8 | 75 |
| MIMAT0013093 | eca-miR-28-3p | 1 | __...... | 6 | 75 |
| MIMAT0012991 | eca-miR-34b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011662 | ppc-miR-86 | 8 | ......__ | 3 | 75 |
| MIMAT0011619 | crm-miR-71-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011602 | crm-miR-785 | 8 | ......__ | 3 | 75 |
| MIMAT0011585 | crm-miR-86-5p | 8 | ......__ | 3 | 75 |
| MIMAT0011407 | sme-miR-2147d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011312 | dre-miR-2192 | 8 | ......__ | 3 | 75 |
| MIMAT0011269 | sme-miR-2170 | 8 | ......__ | 3 | 75 |
| MIMAT0009982 | bfl-miR-2056 | 2 | ......__ | 7 | 75 |
| MIMAT0019109 | tca-miR-71-3p | 3 | _......_ | 8 | 75 |
| MIMAT0008114 | ptr-miR-34c | 3 | _......_ | 8 | 75 |
| MIMAT0007908 | sly-miR1916 | 3 | ......__ | 8 | 75 |
| MIMAT0007906 | bmo-miR-317-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007815 | osa-miR1865-5p | 8 | __...... | 3 | 75 |
| MIMAT0006675 | cfa-miR-28 | 1 | __...... | 6 | 75 |
| MIMAT0006176 | mml-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007687 | gga-miR-1776 | 8 | _......_ | 3 | 75 |
| MIMAT0007404 | gga-miR-1550-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007109 | oan-miR-34a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005908 | hsa-miR-1257 | 6 | ......__ | 1 | 75 |
| MIMAT0005356 | tae-miR1121 | 8 | _......_ | 3 | 75 |
| MIMAT0012545 | mdv2-miR-M29-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004286 | cbr-miR-785a | 8 | ......__ | 3 | 75 |
| MIMAT0004220 | cel-miR-785-3p | 8 | ......__ | 3 | 75 |
| MIMAT0032011 | dre-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003410 | ebv-miR-BART3-5p | 8 | __...... | 3 | 75 |
| MIMAT0026575 | mml-miR-28-3p | 1 | __...... | 6 | 75 |
| MIMAT0015211 | ssc-miR-28-3p | 1 | __...... | 6 | 75 |
| MIMAT0026541 | gga-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026540 | gga-miR-34b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004723 | rno-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017105 | rno-miR-34b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004716 | rno-miR-28-3p | 1 | __...... | 6 | 75 |
| MIMAT0004677 | hsa-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004661 | mmu-miR-28a-3p | 1 | __...... | 6 | 75 |
| MIMAT0000491 | cbr-miR-86 | 8 | ......__ | 3 | 75 |
| MIMAT0004581 | mmu-miR-34b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004580 | mmu-miR-34c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004502 | hsa-miR-28-3p | 1 | __...... | 6 | 75 |
| MIMAT0000059 | cel-miR-86-5p | 8 | ......__ | 3 | 75 |
| MIMAT0015107 | cel-miR-71-3p | 3 | _......_ | 8 | 75 |
