| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttccacgt | 8 | ||
| MIMAT0028834 | mdo-miR-7386a-5p | 8 | _....... | 2 | 87 |
| MIMAT0028513 | mdo-miR-7271-3p | 7 | ......._ | 1 | 87 |
| MIMAT0026162 | cme-miR396e | 1 | ......._ | 7 | 87 |
| MIMAT0025995 | mdm-miR396g | 1 | ......._ | 7 | 87 |
| MIMAT0025994 | mdm-miR396f | 1 | ......._ | 7 | 87 |
| MIMAT0025561 | bta-miR-6527 | 8 | _....... | 2 | 87 |
| MIMAT0025544 | bta-miR-3956 | 7 | _....... | 1 | 87 |
| MIMAT0024548 | cca-miR6110-3p | 2 | _....... | 8 | 87 |
| MIMAT0022456 | gma-miR5673 | 7 | ......._ | 1 | 87 |
| MIMAT0021180 | mtr-miR5223 | 7 | ......._ | 1 | 87 |
| MIMAT0020430 | tcc-miR396d | 1 | ......._ | 7 | 87 |
| MIMAT0018154 | pab-miR396c | 1 | ......._ | 7 | 87 |
| MIMAT0018153 | pab-miR396b | 1 | ......._ | 7 | 87 |
| MIMAT0016663 | cin-miR-4087-3p | 7 | _....... | 1 | 87 |
| MIMAT0005227 | smo-miR396 | 1 | ......._ | 7 | 87 |
| MIMAT0002037 | ptc-miR396g-5p | 1 | ......._ | 7 | 87 |
| MIMAT0002036 | ptc-miR396f | 1 | ......._ | 7 | 87 |
| MIMAT0035785 | tae-miR9670-3p | 8 | ......c. | 1 | 87 |
| MIMAT0029804 | mmu-miR-7651-5p | 8 | ......t. | 1 | 87 |
| MIMAT0006501 | mml-miR-662 | 1 | .c...... | 8 | 87 |
| MIMAT0007727 | gga-miR-1809 | 8 | .c...... | 1 | 87 |
| MIMAT0003325 | hsa-miR-662 | 1 | .c...... | 8 | 87 |
| MIMAT0037224 | ata-miR9677-5p | 1 | ......__ | 6 | 75 |
| MIMAT0037170 | ata-miR396c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0037168 | ata-miR396e-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035852 | bra-miR396-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035588 | dvi-miR-969-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035481 | sly-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0035455 | sly-miR396a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035300 | gsa-miR-1993-5p | 7 | ......__ | 2 | 75 |
| MIMAT0034475 | eca-miR-8946 | 1 | __...... | 6 | 75 |
| MIMAT0034189 | gra-miR8759 | 8 | ......__ | 3 | 75 |
| MIMAT0034148 | gra-miR8736 | 6 | ......__ | 1 | 75 |
| MIMAT0034008 | gra-miR8650 | 7 | ......__ | 2 | 75 |
| MIMAT0033942 | atr-miR396e | 1 | ......__ | 6 | 75 |
| MIMAT0033941 | atr-miR396d | 2 | _......_ | 7 | 75 |
| MIMAT0033940 | atr-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0033939 | atr-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0033638 | sma-miR-8460-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032882 | ppc-miR-36-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031858 | lus-miR396e | 1 | ......__ | 6 | 75 |
| MIMAT0031822 | cpa-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0031636 | bbe-miR-2070-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031523 | ppe-miR8122-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031495 | ppe-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0031494 | ppe-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0031335 | stu-miR396-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030983 | hsa-miR-8056 | 6 | _......_ | 1 | 75 |
| MIMAT0030686 | prd-miR-7922-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030422 | hsa-miR-7847-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032240 | rgl-miR7799 | 7 | ......__ | 2 | 75 |
| MIMAT0030252 | bdi-miR7755-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031154 | ama-miR396-5p | 1 | ......__ | 6 | 75 |
| MIMAT0029898 | mmu-miR-7686-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029278 | mes-miR396f | 1 | ......__ | 6 | 75 |
| MIMAT0029277 | mes-miR396e | 1 | ......__ | 6 | 75 |
| MIMAT0029276 | mes-miR396d | 1 | ......__ | 6 | 75 |
| MIMAT0029275 | mes-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0029274 | mes-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0029273 | mes-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0028651 | mdo-miR-7325-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028267 | mml-miR-7166-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026147 | cme-miR396d | 1 | ......__ | 6 | 75 |
| MIMAT0026146 | cme-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0026145 | cme-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0026106 | cme-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0025993 | mdm-miR396e | 1 | ......__ | 6 | 75 |
| MIMAT0025992 | mdm-miR396d | 1 | ......__ | 6 | 75 |
| MIMAT0025991 | mdm-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0025990 | mdm-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0025989 | mdm-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0027734 | mmu-miR-6917-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027566 | hsa-miR-6833-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027435 | hsa-miR-6767-3p | 1 | __...... | 6 | 75 |
| MIMAT0025772 | gga-miR-6670-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025475 | hsa-miR-6509-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025287 | hbr-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0027302 | ppe-miR6275 | 7 | ......__ | 2 | 75 |
| MIMAT0024710 | nta-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0024709 | nta-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0024708 | nta-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0027213 | lus-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0027212 | lus-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0027207 | lus-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0024529 | cca-miR396a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0023536 | dpr-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0023465 | hco-miR-5961 | 1 | _......_ | 6 | 75 |
| MIMAT0032132 | gma-miR396k-5p | 1 | ......__ | 6 | 75 |
| MIMAT0022517 | ssl-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0022324 | cin-miR-5600-3p | 7 | ......__ | 2 | 75 |
| MIMAT0022680 | amg-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0022674 | aau-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0021669 | gma-miR396i-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021606 | gma-miR5037c | 7 | ......__ | 2 | 75 |
| MIMAT0020295 | ssp-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0020683 | bdi-miR396e-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020676 | bdi-miR396c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020671 | bdi-miR396d-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021084 | hsa-miR-5092 | 3 | _......_ | 8 | 75 |
| MIMAT0020431 | tcc-miR396e | 1 | ......__ | 6 | 75 |
| MIMAT0020429 | tcc-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0020428 | tcc-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0020427 | tcc-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0019610 | pma-miR-4577 | 8 | _......_ | 3 | 75 |
| MIMAT0019363 | hsa-miR-3978 | 6 | ......__ | 1 | 75 |
| MIMAT0020966 | bcy-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0020965 | bcy-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0020962 | bgy-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0020961 | bgy-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0019290 | oar-miR-3956-5p | 8 | __...... | 3 | 75 |
| MIMAT0018464 | csi-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0018463 | csi-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0018345 | gma-miR396e | 1 | ......__ | 6 | 75 |
| MIMAT0018820 | tca-miR-750-5p | 8 | ......__ | 3 | 75 |
| MIMAT0018152 | pab-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0018122 | hsa-miR-3692-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017756 | esi-miR3455-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017559 | aly-miR396b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017557 | aly-miR396a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015562 | bmo-miR-3373-3p | 2 | __...... | 7 | 75 |
| MIMAT0022839 | hsa-miR-3190-3p | 7 | ......__ | 2 | 75 |
| MIMAT0014769 | api-miR-3033 | 1 | _......_ | 6 | 75 |
| MIMAT0014192 | rco-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0014078 | ccl-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0014015 | zma-miR396f-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014014 | zma-miR396e-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013705 | bmo-miR-2801 | 6 | ......__ | 1 | 75 |
| MIMAT0012577 | aqc-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0012576 | aqc-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0012069 | bta-miR-2477 | 6 | ......__ | 1 | 75 |
| MIMAT0011358 | sbi-miR396e | 1 | ......__ | 6 | 75 |
| MIMAT0019183 | tca-miR-965-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019180 | tca-miR-263a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0010088 | lja-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0010079 | gma-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0010077 | zma-miR396d | 1 | ......__ | 6 | 75 |
| MIMAT0010076 | zma-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0009998 | bfl-miR-2070-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015281 | hsv1-miR-H6-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006560 | vvi-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0026915 | mml-miR-942-3p | 7 | __...... | 2 | 75 |
| MIMAT0006448 | mml-miR-587 | 2 | ......__ | 7 | 75 |
| MIMAT0026862 | mml-miR-376b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007690 | gga-miR-1779 | 8 | __...... | 3 | 75 |
| MIMAT0015245 | cin-miR-1473-5p | 3 | __...... | 8 | 75 |
| MIMAT0007027 | oan-miR-1364 | 1 | ......__ | 6 | 75 |
| MIMAT0006972 | oan-miR-1421e-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005726 | vvi-miR396d | 1 | ......__ | 6 | 75 |
| MIMAT0005725 | vvi-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0005724 | vvi-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0004999 | pta-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0004448 | bna-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0005819 | ghr-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0005818 | ghr-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0011108 | mtr-miR396b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0011107 | mtr-miR396a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0022923 | hsa-miR-376b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0002035 | ptc-miR396e-5p | 1 | ......__ | 6 | 75 |
| MIMAT0002034 | ptc-miR396d | 1 | ......__ | 6 | 75 |
| MIMAT0002033 | ptc-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0002032 | ptc-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0002031 | ptc-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0001703 | zma-miR396a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001702 | zma-miR396b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001688 | gma-miR396b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001687 | gma-miR396a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001657 | sof-miR396 | 1 | ......__ | 6 | 75 |
| MIMAT0001436 | sbi-miR396c | 1 | ......__ | 6 | 75 |
| MIMAT0001435 | sbi-miR396a | 1 | ......__ | 6 | 75 |
| MIMAT0001434 | sbi-miR396b | 1 | ......__ | 6 | 75 |
| MIMAT0015137 | zma-miR164d-3p | 7 | __...... | 2 | 75 |
| MIMAT0000979 | osa-miR396c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000978 | osa-miR396b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000977 | osa-miR396a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000945 | ath-miR396b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000944 | ath-miR396a-5p | 1 | ......__ | 6 | 75 |
