| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttccgccc | 8 | ||
| MIMAT0022824 | sha-miR-1549 | 1 | ........ | 8 | 100 |
| MIMAT0006149 | mdo-miR-1549-3p | 1 | ........ | 8 | 100 |
| MIMAT0034456 | eca-miR-8928 | 2 | _....... | 8 | 87 |
| MIMAT0032833 | cel-miR-8208-5p | 1 | _....... | 7 | 87 |
| MIMAT0023709 | hsa-miR-6084 | 1 | ......._ | 7 | 87 |
| MIMAT0020157 | dme-miR-4947-5p | 2 | ......._ | 8 | 87 |
| MIMAT0015355 | zma-miR398b-5p | 8 | _....... | 2 | 87 |
| MIMAT0012821 | ptr-miR-718 | 2 | ......._ | 8 | 87 |
| MIMAT0012735 | hsa-miR-718 | 2 | ......._ | 8 | 87 |
| MIMAT0009939 | cfa-miR-718 | 2 | ......._ | 8 | 87 |
| MIMAT0006774 | cel-miR-1832a-3p | 8 | _....... | 2 | 87 |
| MIMAT0003514 | mmu-miR-718 | 2 | ......._ | 8 | 87 |
| MIMAT0029109 | gga-miR-7477-3p | 1 | .a...... | 8 | 87 |
| MIMAT0028262 | mml-miR-7165-5p | 8 | .c...... | 1 | 87 |
| MIMAT0026368 | bma-miR-5869 | 1 | ......t. | 8 | 87 |
| MIMAT0027600 | hsa-miR-6850-5p | 8 | ......a. | 1 | 87 |
| MIMAT0019688 | hsa-miR-4632-3p | 1 | .g...... | 8 | 87 |
| MIMAT0016137 | ppy-miR-937 | 1 | ......g. | 8 | 87 |
| MIMAT0013861 | bta-miR-2903 | 1 | ......g. | 8 | 87 |
| MIMAT0037042 | ssc-miR-9824-5p | 6 | _......_ | 1 | 75 |
| MIMAT0036998 | tae-miR9677b | 8 | __...... | 3 | 75 |
| MIMAT0036099 | chi-miR-25-5p | 7 | _......_ | 2 | 75 |
| MIMAT0033748 | pxy-miR-8528a | 6 | __...... | 1 | 75 |
| MIMAT0033659 | sma-miR-8470-5p | 7 | ......__ | 2 | 75 |
| MIMAT0033075 | ppc-miR-8285-5p | 2 | __...... | 7 | 75 |
| MIMAT0032916 | ppc-miR-63j-5p | 1 | __...... | 6 | 75 |
| MIMAT0032562 | ssa-miR-25-3-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032560 | ssa-miR-25-5p | 7 | _......_ | 2 | 75 |
| MIMAT0031418 | mmu-miR-8112 | 3 | _......_ | 8 | 75 |
| MIMAT0030160 | bdi-miR7719-5p | 1 | _......_ | 6 | 75 |
| MIMAT0029957 | osa-miR7693-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029105 | gga-miR-7475-3p | 8 | __...... | 3 | 75 |
| MIMAT0029070 | gga-miR-7458-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029018 | oan-miR-7434-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028797 | mdo-miR-7375-3p | 8 | __...... | 3 | 75 |
| MIMAT0028144 | ssc-miR-7134-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028114 | hsa-miR-7108-3p | 3 | __...... | 8 | 75 |
| MIMAT0027532 | hsa-miR-6816-5p | 8 | __...... | 3 | 75 |
| MIMAT0025740 | gga-miR-6642-3p | 7 | __...... | 2 | 75 |
| MIMAT0024598 | hsa-miR-6125 | 6 | ......__ | 1 | 75 |
| MIMAT0024573 | bta-miR-3141 | 8 | __...... | 3 | 75 |
| MIMAT0024229 | ggo-miR-1228 | 8 | __...... | 3 | 75 |
| MIMAT0023869 | cgr-miR-25-5p | 7 | _......_ | 2 | 75 |
| MIMAT0023307 | osa-miR5832 | 8 | _......_ | 3 | 75 |
| MIMAT0022191 | cel-miR-5550-5p | 3 | __...... | 8 | 75 |
| MIMAT0021572 | asu-miR-5356a-5p | 1 | __...... | 6 | 75 |
| MIMAT0020637 | mmu-miR-5126 | 8 | __...... | 3 | 75 |
| MIMAT0020146 | dme-miR-4940-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019852 | hsa-miR-4730 | 8 | _......_ | 3 | 75 |
| MIMAT0019406 | pma-miR-25b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018178 | hsa-miR-3180 | 8 | __...... | 3 | 75 |
| MIMAT0018563 | ame-miR-3784 | 8 | ......__ | 3 | 75 |
| MIMAT0018552 | ame-miR-3775 | 8 | _......_ | 3 | 75 |
| MIMAT0016312 | sja-miR-3503 | 7 | ......__ | 2 | 75 |
| MIMAT0016091 | ppy-miR-658 | 6 | _......_ | 1 | 75 |
| MIMAT0017788 | esi-miR3452-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017780 | esi-miR3453-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015080 | hsa-miR-3196 | 8 | __...... | 3 | 75 |
| MIMAT0015058 | hsa-miR-3180-3p | 8 | __...... | 3 | 75 |
| MIMAT0015010 | hsa-miR-3141 | 8 | __...... | 3 | 75 |
| MIMAT0014696 | hsv1-miR-H18 | 2 | __...... | 7 | 75 |
| MIMAT0013858 | bta-miR-2900 | 7 | __...... | 2 | 75 |
| MIMAT0013839 | bta-miR-2881 | 7 | __...... | 2 | 75 |
| MIMAT0012715 | hvt-miR-H4-3p | 6 | __...... | 1 | 75 |
| MIMAT0012714 | hvt-miR-H4-5p | 6 | _......_ | 1 | 75 |
| MIMAT0013641 | bmo-miR-2766-5p | 1 | __...... | 6 | 75 |
| MIMAT0012321 | dps-miR-2532 | 7 | __...... | 2 | 75 |
| MIMAT0012046 | bta-miR-1777b | 8 | __...... | 3 | 75 |
| MIMAT0012009 | bta-miR-2436-3p | 2 | __...... | 7 | 75 |
| MIMAT0011965 | bta-miR-2407 | 8 | __...... | 3 | 75 |
| MIMAT0011441 | cel-miR-2213-5p | 7 | _......_ | 2 | 75 |
| MIMAT0009362 | bta-miR-658 | 6 | _......_ | 1 | 75 |
| MIMAT0008307 | ptr-miR-658 | 6 | _......_ | 1 | 75 |
| MIMAT0007870 | mmu-miR-1900 | 3 | __...... | 8 | 75 |
| MIMAT0007688 | gga-miR-1777 | 8 | __...... | 3 | 75 |
| MIMAT0007670 | gga-miR-1763 | 8 | __...... | 3 | 75 |
| MIMAT0007473 | gga-miR-1607 | 8 | __...... | 3 | 75 |
| MIMAT0005961 | osa-miR1427 | 7 | ......__ | 2 | 75 |
| MIMAT0007032 | oan-miR-1367-3p | 8 | ......__ | 3 | 75 |
| MIMAT0005582 | hsa-miR-1228-5p | 8 | __...... | 3 | 75 |
| MIMAT0004413 | rrv-miR-rR1-6-5p | 7 | ......__ | 2 | 75 |
| MIMAT0003336 | hsa-miR-658 | 6 | _......_ | 1 | 75 |
| MIMAT0031946 | dre-miR-25-5p | 7 | _......_ | 2 | 75 |
| MIMAT0026431 | sbi-miR169d-3p | 6 | __...... | 1 | 75 |
| MIMAT0004713 | rno-miR-25-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017049 | mmu-miR-25-5p | 7 | _......_ | 2 | 75 |
| MIMAT0020836 | dme-miR-310-5p | 7 | __...... | 2 | 75 |
| MIMAT0004498 | hsa-miR-25-5p | 7 | _......_ | 2 | 75 |
| MIMAT0000027 | cel-miR-56-5p | 7 | _......_ | 2 | 75 |
