| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttctcct | 7 | ||
| MIMAT0037210 | ata-miR395c-5p | 2 | ....... | 8 | 100 |
| MIMAT0034227 | gra-miR7504m | 2 | ....... | 8 | 100 |
| MIMAT0034226 | gra-miR7504l | 2 | ....... | 8 | 100 |
| MIMAT0034225 | gra-miR7504k | 2 | ....... | 8 | 100 |
| MIMAT0034068 | gra-miR7504f | 7 | ....... | 1 | 100 |
| MIMAT0034067 | gra-miR7504e | 7 | ....... | 1 | 100 |
| MIMAT0025816 | gga-miR-6706-5p | 7 | ....... | 1 | 100 |
| MIMAT0025715 | gga-miR-6619-5p | 7 | ....... | 1 | 100 |
| MIMAT0024832 | hvu-miR6204 | 7 | ....... | 1 | 100 |
| MIMAT0022496 | hsa-miR-5703 | 7 | ....... | 1 | 100 |
| MIMAT0027089 | bdi-miR395e-5p | 2 | ....... | 8 | 100 |
| MIMAT0018950 | hsa-miR-4434 | 7 | ....... | 1 | 100 |
| MIMAT0017779 | esi-miR3453-5p | 1 | ....... | 7 | 100 |
| MIMAT0007460 | gga-miR-1596-5p | 2 | ....... | 8 | 100 |
| MIMAT0003115 | rno-miR-207 | 2 | ....... | 8 | 100 |
| MIMAT0015166 | zma-miR395a-5p | 2 | ....... | 8 | 100 |
| MIMAT0037214 | ata-miR1432-5p | 8 | _...... | 3 | 85 |
| MIMAT0037005 | ssc-miR-9788-3p | 8 | _...... | 3 | 85 |
| MIMAT0036407 | ggo-miR-519e-5p | 1 | ......_ | 6 | 85 |
| MIMAT0036405 | ggo-miR-515-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035410 | nve-miR-9449 | 3 | _...... | 8 | 85 |
| MIMAT0035118 | efu-miR-9348 | 3 | ......_ | 8 | 85 |
| MIMAT0034979 | efu-miR-9306 | 1 | _...... | 6 | 85 |
| MIMAT0034918 | efu-miR-9280 | 1 | ......_ | 6 | 85 |
| MIMAT0034898 | efu-miR-9268 | 3 | ......_ | 8 | 85 |
| MIMAT0034621 | eca-miR-9076 | 1 | _...... | 6 | 85 |
| MIMAT0033891 | atr-miR8602 | 8 | _...... | 3 | 85 |
| MIMAT0033671 | sma-miR-8475-5p | 3 | _...... | 8 | 85 |
| MIMAT0033404 | str-miR-47-5p | 7 | _...... | 2 | 85 |
| MIMAT0033192 | ppc-miR-8324-5p | 8 | _...... | 3 | 85 |
| MIMAT0031425 | mmu-miR-8119 | 7 | _...... | 2 | 85 |
| MIMAT0031419 | mmu-miR-8113 | 7 | _...... | 2 | 85 |
| MIMAT0031407 | mmu-miR-8103 | 1 | _...... | 6 | 85 |
| MIMAT0030342 | hhi-miR-7795 | 6 | _...... | 1 | 85 |
| MIMAT0030170 | bdi-miR7722-5p | 1 | _...... | 6 | 85 |
| MIMAT0029033 | gga-miR-7439-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028503 | mdo-miR-30c-1-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028018 | mmu-miR-7057-5p | 7 | _...... | 2 | 85 |
| MIMAT0028004 | mmu-miR-7050-5p | 8 | _...... | 3 | 85 |
| MIMAT0027979 | mmu-miR-7037-3p | 3 | _...... | 8 | 85 |
| MIMAT0027928 | mmu-miR-7012-5p | 7 | _...... | 2 | 85 |
| MIMAT0027853 | mmu-miR-6975-3p | 3 | _...... | 8 | 85 |
| MIMAT0027676 | hsa-miR-6888-5p | 7 | _...... | 2 | 85 |
| MIMAT0027656 | hsa-miR-6878-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027591 | hsa-miR-6845-3p | 3 | _...... | 8 | 85 |
| MIMAT0025805 | gga-miR-6698-3p | 8 | _...... | 3 | 85 |
| MIMAT0025722 | gga-miR-6626-5p | 6 | _...... | 1 | 85 |
| MIMAT0025648 | gga-miR-6570-3p | 8 | _...... | 3 | 85 |
| MIMAT0025625 | gga-miR-6559-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024818 | hvu-miR6192 | 7 | _...... | 2 | 85 |
| MIMAT0024353 | mml-miR-519e | 1 | ......_ | 6 | 85 |
| MIMAT0024069 | ptr-miR-4428 | 8 | _...... | 3 | 85 |
| MIMAT0021233 | mtr-miR5239 | 8 | ......_ | 3 | 85 |
| MIMAT0021178 | mtr-miR5221 | 6 | _...... | 1 | 85 |
| MIMAT0021123 | hsa-miR-5192 | 6 | _...... | 1 | 85 |
| MIMAT0021089 | osa-miR5144-3p | 1 | _...... | 6 | 85 |
| MIMAT0020561 | osa-miR5075 | 1 | ......_ | 6 | 85 |
| MIMAT0020251 | egr-miR-4990 | 1 | _...... | 6 | 85 |
| MIMAT0020467 | bfl-miR-4882b | 6 | ......_ | 1 | 85 |
| MIMAT0020043 | sko-miR-4830b-3p | 1 | _...... | 6 | 85 |
| MIMAT0019948 | hsa-miR-4784 | 8 | _...... | 3 | 85 |
| MIMAT0019921 | hsa-miR-4768-3p | 8 | _...... | 3 | 85 |
| MIMAT0019820 | hsa-miR-4713-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019070 | hsa-miR-4531 | 8 | ......_ | 3 | 85 |
| MIMAT0018943 | hsa-miR-4428 | 8 | _...... | 3 | 85 |
| MIMAT0018194 | hsa-miR-3150b-3p | 8 | _...... | 3 | 85 |
| MIMAT0016909 | hsa-miR-4279 | 2 | _...... | 7 | 85 |
| MIMAT0016309 | sja-miR-3500 | 6 | _...... | 1 | 85 |
| MIMAT0016178 | ppy-miR-1253 | 8 | _...... | 3 | 85 |
| MIMAT0015989 | ppy-miR-539 | 6 | ......_ | 1 | 85 |
| MIMAT0015943 | ppy-miR-515-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014830 | mmu-miR-3062-5p | 6 | ......_ | 1 | 85 |
| MIMAT0013167 | eca-miR-539 | 6 | ......_ | 1 | 85 |
| MIMAT0012865 | hvt-miR-H13 | 3 | ......_ | 8 | 85 |
| MIMAT0012730 | iltv-miR-I6-5p | 2 | _...... | 7 | 85 |
| MIMAT0012583 | aqc-miR477f | 2 | _...... | 7 | 85 |
| MIMAT0012375 | dps-miR-2556-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012081 | bta-miR-2486-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012036 | bta-miR-2454-3p | 1 | _...... | 6 | 85 |
| MIMAT0011947 | bta-miR-2394 | 1 | ......_ | 6 | 85 |
| MIMAT0015295 | bmo-miR-965-5p | 8 | ......_ | 3 | 85 |
| MIMAT0009935 | cfa-miR-207 | 3 | ......_ | 8 | 85 |
| MIMAT0009909 | cfa-miR-539 | 6 | ......_ | 1 | 85 |
| MIMAT0009342 | bta-miR-539 | 6 | ......_ | 1 | 85 |
| MIMAT0008214 | ptr-miR-539 | 6 | ......_ | 1 | 85 |
| MIMAT0006537 | mml-miR-936 | 8 | _...... | 3 | 85 |
| MIMAT0006491 | mml-miR-650d | 6 | _...... | 1 | 85 |
| MIMAT0006405 | mml-miR-539 | 6 | ......_ | 1 | 85 |
| MIMAT0031117 | mml-miR-30c-2-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005979 | mdv1-miR-M9-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007209 | oan-miR-1402 | 8 | ......_ | 3 | 85 |
| MIMAT0006952 | oan-miR-1355-3p | 1 | _...... | 6 | 85 |
| MIMAT0005533 | mcmv-miR-m01-1 | 8 | _...... | 3 | 85 |
| MIMAT0004847 | mmu-miR-882 | 6 | _...... | 1 | 85 |
| MIMAT0004247 | ath-miR830-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003176 | rno-miR-539-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003169 | mmu-miR-539-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003163 | hsa-miR-539-5p | 6 | ......_ | 1 | 85 |
| MIMAT0002828 | hsa-miR-519e-5p | 1 | ......_ | 6 | 85 |
| MIMAT0002826 | hsa-miR-515-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026515 | gga-miR-30c-2-3p | 8 | ......_ | 3 | 85 |
| MIMAT0000240 | mmu-miR-207 | 3 | ......_ | 8 | 85 |
