| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgggtcc | 8 | ||
| MIMAT0033571 | sma-miR-8433-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028308 | mml-miR-7181-5p | 1 | _....... | 7 | 87 |
| MIMAT0028264 | mml-miR-1180-5p | 7 | _....... | 1 | 87 |
| MIMAT0025647 | gga-miR-6570-5p | 8 | _....... | 2 | 87 |
| MIMAT0013080 | eca-miR-711 | 8 | _....... | 2 | 87 |
| MIMAT0013051 | eca-miR-493a | 2 | ......._ | 8 | 87 |
| MIMAT0012820 | ptr-miR-711 | 8 | _....... | 2 | 87 |
| MIMAT0012796 | mml-miR-711 | 8 | _....... | 2 | 87 |
| MIMAT0012734 | hsa-miR-711 | 8 | _....... | 2 | 87 |
| MIMAT0026735 | hsa-miR-1180-5p | 7 | _....... | 1 | 87 |
| MIMAT0005383 | cre-miR1146 | 2 | _....... | 8 | 87 |
| MIMAT0028739 | mdo-miR-7363-3p | 8 | ......a. | 1 | 87 |
| MIMAT0027932 | mmu-miR-7014-5p | 1 | ......g. | 8 | 87 |
| MIMAT0037268 | ame-miR-3718c | 3 | ......__ | 8 | 75 |
| MIMAT0036779 | oha-miR-193-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035203 | dme-miR-9370-5p | 2 | ......__ | 7 | 75 |
| MIMAT0034993 | efu-miR-9316 | 8 | __...... | 3 | 75 |
| MIMAT0034816 | efu-miR-9223a | 1 | ......__ | 6 | 75 |
| MIMAT0034789 | efu-miR-9203a | 3 | ......__ | 8 | 75 |
| MIMAT0034553 | eca-miR-9012 | 1 | _......_ | 6 | 75 |
| MIMAT0034503 | eca-miR-8968 | 3 | _......_ | 8 | 75 |
| MIMAT0034188 | gra-miR8757b | 1 | _......_ | 6 | 75 |
| MIMAT0033986 | gra-miR8636 | 7 | __...... | 2 | 75 |
| MIMAT0033331 | str-miR-81a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033315 | str-miR-7880d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032664 | ssa-miR-551-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031736 | bbe-miR-4857-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030934 | stu-miR8030-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031189 | stu-miR7999-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030688 | prd-miR-81-5p | 1 | _......_ | 6 | 75 |
| MIMAT0030097 | bdi-miR5163b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029652 | cbn-miR-7614 | 8 | ......__ | 3 | 75 |
| MIMAT0029581 | cbr-miR-7580 | 8 | ......__ | 3 | 75 |
| MIMAT0029542 | ipu-miR-551 | 8 | _......_ | 3 | 75 |
| MIMAT0028734 | mdo-miR-7361-5p | 8 | __...... | 3 | 75 |
| MIMAT0028725 | mdo-miR-7356-3p | 2 | __...... | 7 | 75 |
| MIMAT0031109 | mdo-miR-219-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028394 | mmu-miR-7213-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028368 | mml-miR-7202-5p | 1 | ......__ | 6 | 75 |
| MIMAT0026436 | sbi-miR6230-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026329 | ccr-miR-551 | 8 | _......_ | 3 | 75 |
| MIMAT0028126 | hsa-miR-7114-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027807 | mmu-miR-6953-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027581 | hsa-miR-6839-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025576 | bta-miR-2285s | 8 | _......_ | 3 | 75 |
| MIMAT0025388 | ssc-miR-2366 | 1 | _......_ | 6 | 75 |
| MIMAT0025379 | ssc-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0032138 | sma-miR-61-5p | 3 | _......_ | 8 | 75 |
| MIMAT0024756 | nta-miR6154b | 1 | _......_ | 6 | 75 |
| MIMAT0024755 | nta-miR6154a | 1 | _......_ | 6 | 75 |
| MIMAT0024188 | ggo-miR-551b | 8 | _......_ | 3 | 75 |
| MIMAT0024186 | ggo-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0023987 | cgr-miR-615-5p | 3 | __...... | 8 | 75 |
| MIMAT0023892 | cgr-miR-3072-5p | 8 | __...... | 3 | 75 |
| MIMAT0022030 | aca-miR-5412-5p | 3 | __...... | 8 | 75 |
| MIMAT0021982 | aca-miR-551 | 8 | _......_ | 3 | 75 |
| MIMAT0021826 | aca-miR-193-5p | 1 | _......_ | 6 | 75 |
| MIMAT0020534 | ath-miR5028 | 3 | ......__ | 8 | 75 |
| MIMAT0019662 | pma-miR-4628 | 1 | __...... | 6 | 75 |
| MIMAT0019586 | pma-miR-4554 | 1 | _......_ | 6 | 75 |
| MIMAT0019558 | pma-miR-551 | 8 | _......_ | 3 | 75 |
| MIMAT0016907 | hsa-miR-4281 | 1 | __...... | 6 | 75 |
| MIMAT0015998 | ppy-miR-551b | 8 | _......_ | 3 | 75 |
| MIMAT0015997 | ppy-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0015787 | ppy-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017700 | aly-miR774b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015553 | bmo-miR-3367 | 2 | ......__ | 7 | 75 |
| MIMAT0014903 | mmu-miR-3091-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014852 | mmu-miR-3072-5p | 8 | __...... | 3 | 75 |
| MIMAT0014654 | tgu-miR-193b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0014541 | tgu-miR-551-3p | 8 | _......_ | 3 | 75 |
| MIMAT0013894 | ssc-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013094 | eca-miR-551b | 8 | _......_ | 3 | 75 |
| MIMAT0013025 | eca-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012976 | eca-miR-615-5p | 3 | __...... | 8 | 75 |
| MIMAT0012921 | eca-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0012859 | rno-miR-711 | 7 | __...... | 2 | 75 |
| MIMAT0012835 | rno-miR-615 | 3 | __...... | 8 | 75 |
| MIMAT0012764 | mdo-miR-551b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012763 | mdo-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0013332 | mtr-miR2616 | 2 | ......__ | 7 | 75 |
| MIMAT0012000 | bta-miR-2430 | 3 | _......_ | 8 | 75 |
| MIMAT0011975 | bta-miR-2413 | 8 | __...... | 3 | 75 |
| MIMAT0011904 | bta-miR-2366 | 1 | _......_ | 6 | 75 |
| MIMAT0011630 | crm-miR-2230-3p | 8 | ......__ | 3 | 75 |
| MIMAT0009920 | cfa-miR-615 | 3 | __...... | 8 | 75 |
| MIMAT0009913 | cfa-miR-551b | 8 | _......_ | 3 | 75 |
| MIMAT0009912 | cfa-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0009355 | bta-miR-615 | 3 | __...... | 8 | 75 |
| MIMAT0009347 | bta-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0008232 | ptr-miR-551b | 8 | _......_ | 3 | 75 |
| MIMAT0008231 | ptr-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0006735 | cfa-miR-193a | 1 | _......_ | 6 | 75 |
| MIMAT0006465 | mml-miR-615-5p | 3 | __...... | 8 | 75 |
| MIMAT0006420 | mml-miR-551b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006419 | mml-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0006225 | mml-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026787 | gga-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0007569 | gga-miR-1682 | 1 | _......_ | 6 | 75 |
| MIMAT0007290 | gga-miR-551-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007130 | oan-miR-551-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005412 | cre-miR1160.3 | 8 | __...... | 3 | 75 |
| MIMAT0005405 | cre-miR1156.1 | 7 | __...... | 2 | 75 |
| MIMAT0026677 | mdo-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003794 | bta-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004837 | mmu-miR-615-5p | 3 | __...... | 8 | 75 |
| MIMAT0003501 | mmu-miR-711 | 7 | __...... | 2 | 75 |
| MIMAT0003890 | mmu-miR-551b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004804 | hsa-miR-615-5p | 3 | __...... | 8 | 75 |
| MIMAT0003233 | hsa-miR-551b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003214 | hsa-miR-551a | 8 | _......_ | 3 | 75 |
| MIMAT0031981 | dre-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004736 | rno-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004614 | hsa-miR-193a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004544 | mmu-miR-193a-5p | 1 | _......_ | 6 | 75 |
