VIRmiRNA -A database of viral miRNA
VMR_0300 details

miRNA Id:VMR_0300
Virus:Herpes simplex virus 1 (HSV1)
Taxonomy:View
Nomenclature:hsv1-miR-h18
miRNA Sequence: cccgcccgccggacgccgggacc
Length: 23
Predicted secondary structure (UNAfold):
GC Content (%):91.3
pre-miRNA:hsv1-mir-h18
pre-miRNA Sequence:cggucccgcccgccggacgccgggaccaacgggacggcgggcggcccaagggccgcccgccuugccgcccccccauuggccggcgggcgggaccg
Arm: 5p
Cell line: HEK293, Vero cells
Method:Solexa(NGS)
Reference: 20181707
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed