VIRmiRNA -A database of viral miRNA
VMR_0336 details

miRNA Id:VMR_0336
Virus:Herpes simplex virus 2 (HSV2)
Taxonomy:View
Nomenclature:hsv2-miR-h5
miRNA Sequence: gggggggcucgggccaccugacc
Length: 23
Predicted secondary structure (UNAfold):
GC Content (%):82.61
pre-miRNA:hsv2-mir-h5
pre-miRNA Sequence:cucccgcuccugcgggggggcucgggccaccugaccuucguaaccugcacucaggucagagccccagaccccccgcgggcgcgggag
Arm: 5p
Cell line: HEK293, Vero cells
Method:Solexa(NGS)
Reference: 20181707
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed