VIRmiRNA -A database of viral miRNA
VMR_0973 details

miRNA Id:VMR_0973
Virus:Rhesus lymphocryptovirus (RLCV)
Taxonomy:View
Nomenclature:rlcv-miR-rl1-1-5p
miRNA Sequence: uaaccugaucagccccgggguu
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):59.09
pre-miRNA:rlcv-mir-rl1-1
pre-miRNA Sequence:ggccggcuccuuauuaaccugaucagccccgggguugccugucuuagcacuaacuccgggccugaagagguugacaagaaggguc
Arm: 5p
Cell line: PEL, BL, LCL cells
Method:Cloned, Solexa(NGS)
Reference: 16557291, 20219930
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed