VIRmiRNA | Resource for experimental viral miRNA and their targets

Predicted targets for your query miRNA sequence
>tumv-miR-s54
ugcagug

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Gene	Start	Alignment	End	% Identity
Query		1	`tgcagtg`	7
ENST00000604835	ENSG00000270715 transcript	434	`_.......`	440	100
ENST00000519308	ENSG00000254017 transcript	1044	`_.......`	1050	100
ENST00000521393	ENSG00000253692 transcript	434	`_.......`	440	100
ENST00000572306	ENSG00000262604 transcript	242	`_.......`	248	100
ENST00000573530	ENSG00000262178 transcript	157	`_.......`	151	100
ENST00000573096	ENSG00000262715 transcript	58	`_.......`	64	100
ENST00000570383	ENSG00000262550 transcript	813	`_.......`	819	100
ENST00000606598	ENSG00000272813 transcript	931	`_.......`	925	100
ENST00000575254	ENSG00000262373 transcript	171	`_.......`	177	100
ENST00000601331	ENSG00000268291 transcript	450	`_.......`	444	100
ENST00000576598	ENSG00000262675 transcript	598	`_.......`	592	100
ENST00000572137	ENSG00000262268 transcript	559	`_.......`	565	100
ENST00000575343	ENSG00000262268 transcript	559	`_.......`	565	100
ENST00000606805	ENSG00000273194 transcript	931	`_.......`	925	100
ENST00000579792	ENSG00000264945 transcript	480	`_.......`	486	100
ENST00000571683	ENSG00000263221 transcript	242	`_.......`	248	100
ENST00000573914	ENSG00000262625 transcript	480	`_.......`	486	100
ENST00000574663	ENSG00000263251 transcript	242	`_.......`	248	100
ENST00000572194	ENSG00000261849 transcript	480	`_.......`	486	100
ENST00000575259	ENSG00000261988 transcript	157	`_.......`	151	100
ENST00000571283	ENSG00000263112 transcript	58	`_.......`	64	100
ENST00000573575	ENSG00000263153 transcript	58	`_.......`	64	100
ENST00000597839	ENSG00000269059 transcript	10	`_.......`	16	100
ENST00000601316	ENSG00000273022 transcript	646	`_.......`	640	100
ENST00000601944	ENSG00000273041 transcript	646	`_.......`	640	100
ENST00000609136	ENSG00000273339 transcript	76	`_.......`	70	100
ENST00000609136	ENSG00000273339 transcript	506	`_.......`	512	100
ENST00000609136	ENSG00000273339 transcript	1316	`_.......`	1322	100
ENST00000609136	ENSG00000273339 transcript	1979	`_.......`	1985	100
ENST00000595364	ENSG00000268641 transcript	341	`_.......`	347	100
ENST00000575407	ENSG00000263055 transcript	137	`_.......`	143	100
ENST00000599025	ENSG00000268096 transcript	31	`_.......`	25	100
ENST00000597604	ENSG00000269447 transcript	309	`_.......`	315	100
ENST00000603850	ENSG00000271013 transcript	1125	`_.......`	1131	100
ENST00000603850	ENSG00000271013 transcript	3241	`_.......`	3235	100
ENST00000603850	ENSG00000271013 transcript	3283	`_.......`	3277	100
ENST00000609010	ENSG00000272878 transcript	162	`_.......`	156	100
ENST00000608776	ENSG00000273168 transcript	9	`_.......`	15	100
ENST00000609838	GRCh37:HG1350	1294	`_.......`	1288	100
ENST00000602196	ENSG00000268236 transcript	17	`_.......`	11	100
ENST00000602196	ENSG00000268236 transcript	75	`_.......`	69	100
ENST00000591068	ENSG00000267464 transcript	66	`_.......`	60	100
ENST00000589696	ENSG00000267584 transcript	171	`_.......`	165	100
ENST00000563982	ENSG00000261503 transcript	76	`_.......`	70	100
ENST00000607913	ENSG00000261503 transcript	118	`_.......`	112	100
ENST00000608618	ENSG00000272890 transcript	226	`_.......`	232	100
ENST00000608618	ENSG00000272890 transcript	421	`_.......`	427	100
ENST00000608618	ENSG00000272890 transcript	531	`_.......`	537	100
ENST00000608922	ENSG00000272753 transcript	685	`_.......`	691	100
ENST00000608922	ENSG00000272753 transcript	840	`_.......`	846	100
ENST00000608922	ENSG00000272753 transcript	880	`_.......`	886	100
ENST00000602392	GRCh37:HG344	723	`_.......`	729	100
ENST00000602392	GRCh37:HG344	750	`_.......`	744	100
ENST00000594499	GRCh37:HG344	185	`_.......`	179	100
ENST00000601111	GRCh37:HG344	452	`_.......`	446	100
ENST00000609989	ENSG00000272587 transcript	2910	`_.......`	2916	100
ENST00000609989	ENSG00000272587 transcript	2937	`_.......`	2931	100
ENST00000609989	ENSG00000272587 transcript	3297	`_.......`	3291	100
ENST00000608101	ENSG00000273206 transcript	57	`_.......`	51	100
ENST00000609138	ENSG00000273332 transcript	935	`_.......`	929	100
ENST00000582460	ENSG00000264938 transcript	824	`_.......`	830	100
ENST00000608608	GRCh37:HG174	1879	`_.......`	1885	100
ENST00000608608	GRCh37:HG174	1906	`_.......`	1900	100
ENST00000608608	GRCh37:HG174	1911	`_.......`	1905	100
ENST00000607563	ENSG00000272228 transcript	1181	`_.......`	1187	100
ENST00000602364	GRCh37:HG1426	1125	`_.......`	1131	100
ENST00000602364	GRCh37:HG1426	1152	`_.......`	1146	100
ENST00000602364	GRCh37:HG1426	1366	`_.......`	1360	100
ENST00000602364	GRCh37:HG1426	2134	`_.......`	2140	100
ENST00000598941	ENSG00000268418 transcript	263	`_.......`	257	100
ENST00000596642	ENSG00000268937 transcript	543	`_.......`	537	100
ENST00000597387	ENSG00000268771 transcript	90	`_.......`	84	100
ENST00000597031	ENSG00000267887 transcript	909	`_.......`	915	100
ENST00000595664	ENSG00000268917 transcript	351	`_.......`	357	100
ENST00000599383	ENSG00000268022 transcript	171	`_.......`	177	100
ENST00000601269	ENSG00000269683 transcript	335	`_.......`	341	100
ENST00000596868	ENSG00000269567 transcript	485	`_.......`	491	100
ENST00000599623	ENSG00000269287 transcript	794	`_.......`	788	100
ENST00000601554	ENSG00000269673 transcript	892	`_.......`	898	100
ENST00000605628	ENSG00000270481 transcript	480	`_.......`	486	100
ENST00000605622	ENSG00000270319 transcript	242	`_.......`	248	100
ENST00000605037	ENSG00000271229 transcript	157	`_.......`	151	100
ENST00000604090	ENSG00000271126 transcript	58	`_.......`	64	100
ENST00000594420	ENSG00000269123 transcript	325	`_.......`	319	100
ENST00000596429	ENSG00000268625 transcript	275	`_.......`	269	100
ENST00000599502	ENSG00000268625 transcript	659	`_.......`	653	100
ENST00000596316	ENSG00000268921 transcript	820	`_.......`	826	100
ENST00000596316	ENSG00000268921 transcript	1257	`_.......`	1263	100
ENST00000605077	ENSG00000270943 transcript	328	`_.......`	322	100
ENST00000581465	ENSG00000266681 transcript	437	`_.......`	443	100
ENST00000580133	ENSG00000263366 transcript	422	`_.......`	416	100
ENST00000606423	ENSG00000271928 transcript	195	`_.......`	189	100
ENST00000581791	ENSG00000264154 transcript	797	`_.......`	803	100
ENST00000579709	ENSG00000265196 transcript	182	`_.......`	176	100
ENST00000605243	ENSG00000271476 transcript	55	`_.......`	61	100
ENST00000600401	ENSG00000267899 transcript	1823	`_.......`	1817	100
ENST00000600401	ENSG00000267899 transcript	2768	`_.......`	2774	100
ENST00000600401	ENSG00000267899 transcript	3365	`_.......`	3359	100
ENST00000600401	ENSG00000267899 transcript	5102	`_.......`	5108	100
ENST00000600401	ENSG00000267899 transcript	5581	`_.......`	5587	100
ENST00000598617	ENSG00000269500 transcript	55	`_.......`	61	100
ENST00000597092	ENSG00000268542 transcript	362	`_.......`	368	100
ENST00000582255	ENSG00000264145 transcript	1610	`_.......`	1616	100
ENST00000594185	ENSG00000268718 transcript	144	`_.......`	138	100
ENST00000582116	ENSG00000268526 transcript	81	`_.......`	87	100
ENST00000606625	ENSG00000271915 transcript	287	`_.......`	293	100
ENST00000601598	ENSG00000268727 transcript	1013	`_.......`	1007	100
ENST00000597722	ENSG00000268715 transcript	189	`_.......`	183	100
ENST00000598123	ENSG00000268607 transcript	42	`_.......`	36	100
ENST00000602991	ENSG00000271556 transcript	39	`_.......`	45	100
ENST00000594502	ENSG00000268005 transcript	26	`_.......`	32	100
ENST00000595852	ENSG00000267862 transcript	804	`_.......`	810	100
ENST00000595351	ENSG00000268633 transcript	51	`_.......`	57	100
ENST00000599512	ENSG00000269844 transcript	148	`_.......`	154	100