VIRmiRNA | Resource for experimental viral miRNA and their targets

Predicted targets for your query miRNA sequence
>hpv45-miR-h1
aguauagu

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Gene	Start	Alignment	End	% Identity
Query		1	`agtatagt`	8
ENST00000606051	ENSG00000272095 transcript	374	`_........`	367	100
ENST00000571985	ENSG00000262711 transcript	224	`_........`	231	100
ENST00000326237	GRCh37:3:10028595:10046928:1	2576	`_........`	2583	100
ENST00000421366	ENSG00000226444 transcript	139	`_........`	146	100
ENST00000422332	ENSG00000226444 transcript	494	`_........`	501	100
ENST00000414273	ENSG00000237973 transcript	626	`_........`	619	100
ENST00000414273	ENSG00000237973 transcript	57	`__.......`	51	87
ENST00000540341	ENSG00000255967 transcript	1167	`_........`	1160	100
ENST00000537929	ENSG00000256799 transcript	195	`_........`	202	100
ENST00000427989	ENSG00000186481 transcript	1060	`_........`	1067	100
ENST00000443475	ENSG00000235422 transcript	413	`_........`	420	100
ENST00000508893	ENSG00000251588 transcript	1925	`_........`	1932	100
ENST00000508893	ENSG00000251588 transcript	1447	`_......._`	1441	87
ENST00000503863	ENSG00000250416 transcript	1117	`_........`	1110	100
ENST00000588113	ENSG00000267370 transcript	672	`_........`	665	100
ENST00000305934	ENSG00000233247 transcript	358	`_........`	351	100
ENST00000411687	ENSG00000233247 transcript	179	`_........`	172	100
ENST00000435581	GRCh37:X:2527433:2575270:1	2445	`_........`	2438	100
ENST00000400789	ENSG00000215713 transcript	157	`_........`	164	100
ENST00000547979	ENSG00000257188 transcript	373	`_........`	366	100
ENST00000420181	ENSG00000230617 transcript	104	`_........`	111	100
ENST00000438279	ENSG00000226066 transcript	1614	`_........`	1621	100
ENST00000438279	ENSG00000226066 transcript	39	`_......._`	33	87
ENST00000438279	ENSG00000226066 transcript	931	`_......._`	937	87
ENST00000550234	ENSG00000258069 transcript	373	`_........`	366	100
ENST00000576883	ENSG00000261878 transcript	1008	`_........`	1015	100
ENST00000463573	ENSG00000240103 transcript	614	`_........`	607	100
ENST00000604029	ENSG00000270304 transcript	1001	`_........`	994	100
ENST00000437376	ENSG00000224725 transcript	22	`_........`	29	100
ENST00000430943	ENSG00000224725 transcript	22	`_........`	29	100
ENST00000559655	ENSG00000259751 transcript	321	`_........`	314	100
ENST00000435821	ENSG00000227584 transcript	497	`_........`	490	100
ENST00000551028	ENSG00000258059 transcript	373	`_........`	366	100
ENST00000449786	ENSG00000224273 transcript	224	`_........`	231	100
ENST00000549785	ENSG00000257796 transcript	373	`_........`	366	100
ENST00000496068	ENSG00000239280 transcript	136	`_........`	143	100
ENST00000429404	ENSG00000226557 transcript	665	`_........`	658	100
ENST00000550421	ENSG00000257763 transcript	812	`_........`	819	100
ENST00000452645	ENSG00000235462 transcript	465	`_........`	472	100
ENST00000452645	ENSG00000235462 transcript	1075	`__.......`	1081	87
ENST00000605584	ENSG00000270242 transcript	492	`_........`	499	100
ENST00000444698	ENSG00000236818 transcript	246	`_........`	239	100
ENST00000444698	ENSG00000236818 transcript	259	`__.......`	265	87
ENST00000498401	ENSG00000242488 transcript	136	`_........`	129	100
ENST00000466108	ENSG00000241787 transcript	1026	`_........`	1019	100
ENST00000456768	ENSG00000233272 transcript	87	`_........`	94	100
ENST00000608051	ENSG00000272963 transcript	100	`_........`	93	100
ENST00000366439	ENSG00000203632 transcript	1030	`_........`	1037	100
ENST00000436258	GRCh37:7:35129456:35147346:-1	3604	`_........`	3597	100
ENST00000454315	ENSG00000234179 transcript	166	`_........`	159	100
ENST00000534728	GRCh37:11:124983057:124996677:1	2354	`_........`	2361	100
ENST00000534728	GRCh37:11:124983057:124996677:1	1311	`__.......`	1317	87
ENST00000433048	ENSG00000237064 transcript	509	`_........`	516	100
ENST00000438248	GRCh37:10:89578070:89605369:1	1781	`_........`	1774	100
ENST00000438248	GRCh37:10:89578070:89605369:1	1449	`_......._`	1455	87
ENST00000546471	GRCh37:16:21807951:21819058:-1	1365	`_........`	1372	100
ENST00000555838	ENSG00000258878 transcript	13	`_........`	6	100
ENST00000508225	ENSG00000250728 transcript	320	`_........`	313	100
ENST00000508225	ENSG00000250728 transcript	59	`_......._`	53	87
ENST00000605168	ENSG00000270832 transcript	158	`_........`	151	100
ENST00000438337	ENSG00000228492 transcript	1726	`_........`	1719	100
ENST00000438337	ENSG00000228492 transcript	878	`_......._`	884	87
ENST00000382676	ENSG00000206042 transcript	214	`_........`	207	100
ENST00000420174	ENSG00000228764 transcript	812	`_........`	819	100
ENST00000418231	ENSG00000232928 transcript	600	`_........`	593	100
ENST00000566331	ENSG00000260782 transcript	1196	`_........`	1203	100
ENST00000444850	ENSG00000230501 transcript	1008	`_........`	1015	100
ENST00000593000	GRCh37:Y:21754974:21756047:1	59	`_........`	66	100
ENST00000597308	ENSG00000259848 transcript	4935	`_........`	4928	100
ENST00000582835	GRCh37:2:95534430:95613086:-1	2957	`_........`	2950	100
ENST00000568768	GRCh37:2:95533231:95613086:-1	5053	`_........`	5046	100
ENST00000433237	ENSG00000224695 transcript	213	`_........`	206	100
ENST00000530968	ENSG00000254758 transcript	354	`_........`	347	100
ENST00000451061	ENSG00000242153 transcript	2463	`_........`	2470	100
ENST00000534819	GRCh37:11:64941588:64943941:-1	1996	`_........`	2003	100
ENST00000444826	ENSG00000226481 transcript	157	`_........`	164	100
ENST00000413404	ENSG00000226481 transcript	622	`_........`	629	100
ENST00000509197	ENSG00000223788 transcript	463	`_........`	470	100
ENST00000447585	ENSG00000240438 transcript	2078	`_........`	2085	100
ENST00000537988	GRCh37:12:100550217:100556612:-1	1976	`_........`	1969	100
ENST00000545820	GRCh37:12:100550195:100555428:-1	792	`_........`	785	100
ENST00000304813	GRCh37:12:100550135:100555056:-1	420	`_........`	413	100
ENST00000609841	GRCh37:10:42827314:42863422:-1	5265	`_........`	5258	100
ENST00000609841	GRCh37:10:42827314:42863422:-1	642	`__.......`	636	87
ENST00000609841	GRCh37:10:42827314:42863422:-1	1146	`__.......`	1140	87
ENST00000609841	GRCh37:10:42827314:42863422:-1	1477	`__.......`	1471	87
ENST00000609841	GRCh37:10:42827314:42863422:-1	1561	`__.......`	1555	87
ENST00000609841	GRCh37:10:42827314:42863422:-1	1728	`__.......`	1722	87
ENST00000609841	GRCh37:10:42827314:42863422:-1	2230	`__.......`	2224	87
ENST00000609841	GRCh37:10:42827314:42863422:-1	2399	`__.......`	2393	87
ENST00000450258	ENSG00000227992 transcript	322	`_........`	329	100
ENST00000541147	ENSG00000227264 transcript	142	`_........`	149	100
ENST00000448440	ENSG00000227264 transcript	624	`_........`	631	100
ENST00000507622	ENSG00000248448 transcript	259	`_........`	266	100
ENST00000475870	ENSG00000240412 transcript	95	`_........`	88	100
ENST00000578246	GRCh37:HG686	2953	`_........`	2946	100
ENST00000572191	GRCh37:HG686	5053	`_........`	5046	100
ENST00000297235	ENSG00000164669 transcript	2455	`_........`	2462	100
ENST00000587624	GRCh37:7:64601603:64694594:1	2457	`_........`	2464	100
ENST00000514256	ENSG00000250852 transcript	635	`_........`	642	100
ENST00000378112	ENSG00000204959 transcript	3354	`_........`	3361	100
ENST00000483587	ENSG00000204959 transcript	3296	`_........`	3303	100
ENST00000462840	ENSG00000242134 transcript	251	`_........`	258	100
ENST00000462840	ENSG00000242134 transcript	582	`_......._`	576	87
ENST00000451333	ENSG00000231386 transcript	374	`_........`	367	100
ENST00000549640	ENSG00000257571 transcript	373	`_........`	366	100
ENST00000523429	ENSG00000253916 transcript	626	`_........`	619	100
ENST00000523429	ENSG00000253916 transcript	57	`__.......`	51	87
ENST00000445574	ENSG00000225154 transcript	308	`_........`	301	100