VIRmiRNA | Resource for experimental viral miRNA and their targets

Predicted targets for your query miRNA sequence
>mghv-miR-m1-2-3p
cagacccc

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Gene	Start	Alignment	End	% Identity
Query		1	`cagacccc`	8
ENST00000573372	ENSG00000262297 transcript	37	`_........`	44	100
ENST00000572625	ENSG00000262414 transcript	173	`_........`	166	100
ENST00000572625	ENSG00000262414 transcript	36	`__.......`	30	87
ENST00000575493	ENSG00000272673 transcript	297	`_........`	304	100
ENST00000572860	GRCh37:HG151	308	`_........`	315	100
ENST00000573060	ENSG00000262535 transcript	166	`_........`	173	100
ENST00000572114	ENSG00000263224 transcript	173	`_........`	166	100
ENST00000572114	ENSG00000263224 transcript	36	`__.......`	30	87
ENST00000608653	ENSG00000273354 transcript	297	`_........`	304	100
ENST00000574537	ENSG00000263202 transcript	297	`_........`	304	100
ENST00000610257	ENSG00000273016 transcript	297	`_........`	304	100
ENST00000608797	ENSG00000272577 transcript	297	`_........`	304	100
ENST00000609177	ENSG00000272738 transcript	297	`_........`	304	100
ENST00000572745	ENSG00000262266 transcript	37	`_........`	44	100
ENST00000608938	ENSG00000273231 transcript	297	`_........`	304	100
ENST00000574063	ENSG00000262941 transcript	37	`_........`	44	100
ENST00000572983	ENSG00000261979 transcript	173	`_........`	166	100
ENST00000572983	ENSG00000261979 transcript	36	`__.......`	30	87
ENST00000573495	ENSG00000262426 transcript	297	`_........`	304	100
ENST00000603570	ENSG00000270303 transcript	489	`_........`	496	100
ENST00000571758	ENSG00000262424 transcript	181	`_........`	174	100
ENST00000571758	ENSG00000262424 transcript	212	`_........`	205	100
ENST00000597460	ENSG00000269557 transcript	1265	`_........`	1272	100
ENST00000603850	ENSG00000271013 transcript	3145	`_........`	3152	100
ENST00000603850	ENSG00000271013 transcript	244	`_......._`	250	87
ENST00000603850	ENSG00000271013 transcript	868	`_......._`	874	87
ENST00000603850	ENSG00000271013 transcript	1750	`_......._`	1756	87
ENST00000603850	ENSG00000271013 transcript	2118	`__.......`	2124	87
ENST00000603850	ENSG00000271013 transcript	2518	`__.......`	2524	87
ENST00000603850	ENSG00000271013 transcript	4630	`__.......`	4636	87
ENST00000603850	ENSG00000271013 transcript	4909	`_......._`	4915	87
ENST00000603850	ENSG00000271013 transcript	5042	`__.......`	5048	87
ENST00000608599	GRCh37:HG444	88	`_........`	81	100
ENST00000608196	GRCh37:HG444	89	`_........`	82	100
ENST00000610151	ENSG00000273140 transcript	90	`_........`	83	100
ENST00000577205	ENSG00000266659 transcript	181	`_........`	188	100
ENST00000577205	ENSG00000266659 transcript	507	`_......._`	501	87
ENST00000579182	ENSG00000266659 transcript	211	`_........`	218	100
ENST00000579182	ENSG00000266659 transcript	537	`_......._`	531	87
ENST00000610097	ENSG00000273278 transcript	398	`_........`	405	100
ENST00000603765	ENSG00000270785 transcript	37	`_........`	44	100
ENST00000604784	ENSG00000270471 transcript	173	`_........`	166	100
ENST00000604784	ENSG00000270471 transcript	36	`__.......`	30	87
ENST00000604128	ENSG00000270267 transcript	297	`_........`	304	100
ENST00000604353	ENSG00000270803 transcript	755	`_........`	748	100
ENST00000580144	ENSG00000265609 transcript	984	`_........`	977	100
ENST00000584293	GRCh37:HG1287	337	`_........`	344	100
ENST00000580593	GRCh37:HG1287	380	`_........`	387	100
ENST00000578863	GRCh37:HG1287	550	`_........`	557	100
ENST00000578059	ENSG00000265897 transcript	220	`_........`	227	100
ENST00000600401	ENSG00000267899 transcript	1088	`_........`	1095	100
ENST00000600401	ENSG00000267899 transcript	2917	`_........`	2910	100
ENST00000595488	ENSG00000268935 transcript	168	`_........`	175	100
ENST00000594775	ENSG00000268638 transcript	216	`_........`	209	100
ENST00000594775	ENSG00000268638 transcript	361	`__.......`	367	87
ENST00000572055	GRCh37:HG1257	50	`_........`	43	100
ENST00000572055	GRCh37:HG1257	360	`_......._`	366	87
ENST00000572534	ENSG00000261948 transcript	2038	`_........`	2045	100
ENST00000572225	ENSG00000261948 transcript	2437	`_........`	2444	100
ENST00000570348	GRCh37:HG1257	1019	`_........`	1026	100
ENST00000570348	GRCh37:HG1257	806	`_......._`	812	87
ENST00000564253	ENSG00000260295 transcript	971	`_........`	978	100
ENST00000564253	ENSG00000260295 transcript	222	`_......._`	228	87
ENST00000564253	ENSG00000260295 transcript	1102	`_......._`	1096	87
ENST00000396959	ENSG00000213943 transcript	212	`_........`	205	100
ENST00000437591	ENSG00000230342 transcript	962	`_........`	955	100
ENST00000335507	GRCh37:3:10056807:10068044:-1	843	`_........`	836	100
ENST00000335507	GRCh37:3:10056807:10068044:-1	698	`__.......`	704	87
ENST00000432401	GRCh37:3:10055932:10068041:-1	810	`_........`	803	100
ENST00000432401	GRCh37:3:10055932:10068041:-1	665	`__.......`	671	87
ENST00000334645	ENSG00000214041 transcript	338	`_........`	331	100
ENST00000334645	ENSG00000214041 transcript	247	`_......._`	253	87
ENST00000397343	ENSG00000214041 transcript	282	`_........`	275	100
ENST00000397343	ENSG00000214041 transcript	191	`_......._`	197	87
ENST00000538190	ENSG00000256528 transcript	484	`_........`	477	100
ENST00000538190	ENSG00000256528 transcript	701	`_......._`	707	87
ENST00000538190	ENSG00000256528 transcript	832	`__.......`	838	87
ENST00000438441	ENSG00000231565 transcript	427	`_........`	420	100
ENST00000314015	ENSG00000181791 transcript	39	`_........`	46	100
ENST00000314015	ENSG00000181791 transcript	72	`_........`	79	100
ENST00000603489	ENSG00000271002 transcript	97	`_........`	104	100
ENST00000361014	ENSG00000197320 transcript	381	`_........`	388	100
ENST00000443027	ENSG00000197320 transcript	381	`_........`	388	100
ENST00000382252	ENSG00000205903 transcript	2025	`_........`	2018	100
ENST00000570097	ENSG00000259809 transcript	796	`_........`	803	100
ENST00000581685	ENSG00000266488 transcript	1250	`_........`	1243	100
ENST00000438176	ENSG00000231103 transcript	10	`_........`	17	100
ENST00000438808	ENSG00000224904 transcript	1374	`_........`	1381	100
ENST00000605785	ENSG00000270282 transcript	227	`_........`	234	100
ENST00000447122	ENSG00000226462 transcript	224	`_........`	217	100
ENST00000366421	ENSG00000203614 transcript	976	`_........`	983	100
ENST00000366421	ENSG00000203614 transcript	274	`__.......`	280	87
ENST00000457899	ENSG00000231184 transcript	708	`_........`	701	100
ENST00000457899	ENSG00000231184 transcript	142	`__.......`	136	87
ENST00000428076	ENSG00000231184 transcript	462	`_........`	455	100
ENST00000440167	ENSG00000229147 transcript	616	`_........`	623	100
ENST00000433802	ENSG00000229375 transcript	507	`_........`	500	100
ENST00000443167	ENSG00000235876 transcript	1405	`_........`	1398	100
ENST00000572620	ENSG00000262250 transcript	204	`_........`	197	100
ENST00000577130	ENSG00000262627 transcript	182	`_........`	175	100
ENST00000532280	GRCh37:9:33673502:33677497:-1	391	`_........`	384	100
ENST00000438417	ENSG00000240215 transcript	110	`_........`	117	100
ENST00000411618	ENSG00000226246 transcript	207	`_........`	200	100
ENST00000445100	ENSG00000232138 transcript	587	`_........`	580	100
ENST00000437472	ENSG00000223684 transcript	590	`_........`	583	100
ENST00000448683	ENSG00000226597 transcript	590	`_........`	583	100
ENST00000536322	ENSG00000255885 transcript	294	`_........`	301	100
ENST00000434743	ENSG00000234146 transcript	546	`_........`	539	100
ENST00000414503	ENSG00000234643 transcript	31	`_........`	38	100
ENST00000414503	ENSG00000234643 transcript	1	`_......._`	7	87
ENST00000496773	ENSG00000187172 transcript	2295	`_........`	2302	100
ENST00000496773	ENSG00000187172 transcript	1303	`_......._`	1297	87
ENST00000496773	ENSG00000187172 transcript	2051	`_......._`	2057	87
ENST00000576853	GRCh37:HSCHR5	1099	`_........`	1092	100
ENST00000576853	GRCh37:HSCHR5	1542	`_......._`	1536	87
ENST00000576853	GRCh37:HSCHR5	3000	`_......._`	2994	87
ENST00000588744	GRCh37:18:12218651:12223250:1	603	`_........`	596	100
ENST00000586882	GRCh37:18:12209335:12223538:1	734	`_........`	727	100
ENST00000585729	ENSG00000267773 transcript	199	`_........`	206	100
ENST00000369958	ENSG00000215719 transcript	34	`_........`	41	100
ENST00000369958	ENSG00000215719 transcript	4	`_......._`	10	87
ENST00000396647	ENSG00000189145 transcript	12	`_........`	19	100
ENST00000342691	ENSG00000189145 transcript	9	`_........`	16	100
ENST00000424288	ENSG00000237661 transcript	166	`_........`	173	100
ENST00000513621	ENSG00000250624 transcript	245	`_........`	252	100
ENST00000511723	ENSG00000248340 transcript	451	`_........`	458	100
ENST00000511723	ENSG00000248340 transcript	111	`__.......`	117	87
ENST00000511723	ENSG00000248340 transcript	196	`__.......`	202	87
ENST00000604248	ENSG00000270794 transcript	741	`_........`	734	100
ENST00000505463	ENSG00000235413 transcript	213	`_........`	206	100
ENST00000509421	ENSG00000251587 transcript	49	`_........`	56	100
ENST00000505750	ENSG00000250710 transcript	26	`_........`	19	100
ENST00000586415	ENSG00000267589 transcript	12	`_........`	19	100
ENST00000436419	ENSG00000225271 transcript	1817	`_........`	1824	100
ENST00000507448	ENSG00000251535 transcript	398	`_........`	405	100
ENST00000586853	ENSG00000266989 transcript	361	`_........`	368	100
ENST00000589981	ENSG00000267447 transcript	468	`_........`	461	100
ENST00000590372	GRCh37:19:198052:200775:1	149	`_........`	156	100
ENST00000590372	GRCh37:19:198052:200775:1	56	`__.......`	62	87
ENST00000590372	GRCh37:19:198052:200775:1	86	`_......._`	92	87
ENST00000587271	ENSG00000267029 transcript	246	`_........`	253	100
ENST00000587271	ENSG00000267029 transcript	33	`_......._`	27	87
ENST00000587271	ENSG00000267029 transcript	153	`__.......`	159	87
ENST00000587271	ENSG00000267029 transcript	183	`_......._`	189	87
ENST00000607682	GRCh37:19:197075:199431:-1	945	`_........`	938	100
ENST00000607682	GRCh37:19:197075:199431:-1	1008	`_......._`	1002	87
ENST00000607682	GRCh37:19:197075:199431:-1	1038	`__.......`	1032	87
ENST00000607682	GRCh37:19:197075:199431:-1	1158	`_......._`	1164	87
ENST00000433955	ENSG00000230816 transcript	601	`_........`	594	100
ENST00000441636	ENSG00000232705 transcript	283	`_........`	276	100
ENST00000424335	ENSG00000237591 transcript	283	`_........`	276	100
ENST00000395025	ENSG00000250443 transcript	13	`_........`	20	100
ENST00000421007	ENSG00000227526 transcript	283	`_........`	276	100
ENST00000550732	ENSG00000258192 transcript	2161	`_........`	2154	100
ENST00000427841	GRCh37:3:195686792:195717150:-1	1708	`_........`	1715	100
ENST00000434696	ENSG00000237544 transcript	717	`_........`	710	100
ENST00000454169	ENSG00000228990 transcript	224	`_........`	217	100
ENST00000578578	ENSG00000265480 transcript	466	`_........`	459	100
ENST00000578578	ENSG00000265480 transcript	1297	`_......._`	1303	87
ENST00000577198	GRCh37:17:26603012:26634408:-1	811	`_........`	804	100
ENST00000577198	GRCh37:17:26603012:26634408:-1	378	`_......._`	372	87
ENST00000577198	GRCh37:17:26603012:26634408:-1	1642	`_......._`	1648	87
ENST00000584928	ENSG00000266306 transcript	815	`_........`	822	100
ENST00000584928	ENSG00000266306 transcript	453	`__.......`	459	87
ENST00000584928	ENSG00000266306 transcript	1014	`__.......`	1020	87
ENST00000399037	ENSG00000214815 transcript	1431	`_........`	1424	100
ENST00000331842	ENSG00000184100 transcript	1628	`_........`	1635	100
ENST00000466133	ENSG00000184100 transcript	1684	`_........`	1691	100
ENST00000580112	ENSG00000266786 transcript	756	`_........`	749	100
ENST00000432950	ENSG00000151631 transcript	676	`_........`	669	100
ENST00000581294	ENSG00000265646 transcript	1002	`_........`	995	100
ENST00000581294	ENSG00000265646 transcript	79	`_......._`	73	87
ENST00000581294	ENSG00000265646 transcript	635	`__.......`	641	87
ENST00000427228	ENSG00000229889 transcript	717	`_........`	710	100
ENST00000565286	ENSG00000259892 transcript	909	`_........`	916	100
ENST00000565286	ENSG00000259892 transcript	879	`__.......`	885	87
ENST00000562061	ENSG00000261081 transcript	932	`_........`	939	100
ENST00000562061	ENSG00000261081 transcript	902	`__.......`	908	87
ENST00000491096	ENSG00000240601 transcript	55	`_........`	48	100
ENST00000440070	ENSG00000226582 transcript	81	`_........`	74	100
ENST00000585002	ENSG00000266563 transcript	3	`_........`	10	100
ENST00000415487	ENSG00000224444 transcript	717	`_........`	710	100
ENST00000555540	ENSG00000258783 transcript	184	`_........`	177	100
ENST00000555540	ENSG00000258783 transcript	216	`_........`	209	100
ENST00000450065	ENSG00000233028 transcript	728	`_........`	721	100
ENST00000479705	ENSG00000243316 transcript	130	`_........`	137	100
ENST00000451661	ENSG00000231716 transcript	67	`_........`	60	100
ENST00000340731	ENSG00000188013 transcript	164	`_........`	157	100
ENST00000340731	ENSG00000188013 transcript	821	`_......._`	815	87
ENST00000420212	ENSG00000231258 transcript	370	`_........`	377	100
ENST00000420212	ENSG00000231258 transcript	716	`_......._`	722	87
ENST00000471666	ENSG00000213128 transcript	12	`_........`	19	100
ENST00000412958	ENSG00000233505 transcript	224	`_........`	217	100
ENST00000425797	ENSG00000186704 transcript	195	`_........`	202	100
ENST00000566803	ENSG00000260053 transcript	206	`_........`	199	100
ENST00000561950	ENSG00000261524 transcript	188	`_........`	181	100
ENST00000421633	ENSG00000230936 transcript	1442	`_........`	1449	100
ENST00000421633	ENSG00000230936 transcript	344	`_......._`	338	87
ENST00000421633	ENSG00000230936 transcript	765	`__.......`	771	87
ENST00000421633	ENSG00000230936 transcript	1177	`_......._`	1171	87
ENST00000458158	ENSG00000227384 transcript	283	`_........`	276	100
ENST00000604899	ENSG00000270814 transcript	308	`_........`	315	100
ENST00000604899	ENSG00000270814 transcript	9	`__.......`	3	87
ENST00000581013	GRCh37:17:20417947:20419550:-1	32	`_........`	25	100
ENST00000421264	ENSG00000229136 transcript	717	`_........`	710	100
ENST00000584759	GRCh37:17:20404826:20405600:-1	395	`_........`	402	100
ENST00000414464	ENSG00000229413 transcript	110	`_........`	117	100
ENST00000414464	ENSG00000229413 transcript	19	`__.......`	25	87
ENST00000414464	ENSG00000229413 transcript	49	`_......._`	55	87
ENST00000557537	ENSG00000258923 transcript	252	`_........`	259	100
ENST00000556706	ENSG00000258762 transcript	303	`_........`	310	100
ENST00000275590	GRCh37:7:75021229:75024708:-1	50	`_........`	43	100
ENST00000275590	GRCh37:7:75021229:75024708:-1	360	`_......._`	366	87
ENST00000559508	ENSG00000259325 transcript	3786	`_........`	3779	100
ENST00000559508	ENSG00000259325 transcript	918	`__.......`	924	87
ENST00000559508	ENSG00000259325 transcript	1517	`_......._`	1511	87
ENST00000559508	ENSG00000259325 transcript	2901	`__.......`	2907	87
ENST00000558260	ENSG00000259233 transcript	146	`_........`	153	100
ENST00000549521	ENSG00000258112 transcript	303	`_........`	296	100
ENST00000549521	ENSG00000258112 transcript	811	`_......._`	817	87
ENST00000459978	ENSG00000240579 transcript	57	`_........`	64	100
ENST00000459978	ENSG00000240579 transcript	10	`__.......`	16	87
ENST00000459978	ENSG00000240579 transcript	398	`__.......`	404	87
ENST00000574242	ENSG00000263274 transcript	177	`_........`	184	100
ENST00000558695	ENSG00000259689 transcript	205	`_........`	198	100
ENST00000553218	ENSG00000258024 transcript	10	`_........`	17	100
ENST00000545332	ENSG00000232561 transcript	2437	`_........`	2444	100
ENST00000441487	ENSG00000232561 transcript	1997	`_........`	2004	100
ENST00000554586	ENSG00000259025 transcript	215	`_........`	222	100
ENST00000554586	ENSG00000259025 transcript	1610	`_........`	1603	100
ENST00000452153	GRCh37:17:19532764:19537138:1	454	`_........`	461	100
ENST00000418290	ENSG00000228411 transcript	562	`_........`	569	100
ENST00000418290	ENSG00000228411 transcript	596	`_........`	603	100
ENST00000554414	ENSG00000258916 transcript	4589	`_........`	4582	100
ENST00000554414	ENSG00000258916 transcript	821	`__.......`	827	87
ENST00000554414	ENSG00000258916 transcript	1721	`__.......`	1727	87
ENST00000554414	ENSG00000258916 transcript	2320	`_......._`	2314	87
ENST00000554414	ENSG00000258916 transcript	3704	`__.......`	3710	87
ENST00000457750	ENSG00000224769 transcript	19	`_........`	12	100
ENST00000457750	ENSG00000224769 transcript	59	`__.......`	53	87
ENST00000392422	ENSG00000146677 transcript	67	`_........`	74	100
ENST00000487895	ENSG00000146677 transcript	12	`_........`	19	100
ENST00000443820	ENSG00000225117 transcript	969	`_........`	976	100
ENST00000443820	ENSG00000225117 transcript	1093	`_......._`	1099	87
ENST00000560680	ENSG00000259769 transcript	215	`_........`	222	100
ENST00000560680	ENSG00000259769 transcript	1610	`_........`	1603	100
ENST00000487023	ENSG00000243514 transcript	12	`_........`	19	100
ENST00000545716	ENSG00000228903 transcript	1071	`_........`	1064	100
ENST00000545716	ENSG00000228903 transcript	1024	`_......._`	1030	87
ENST00000446874	GRCh37:7:44066550:44078607:-1	1132	`_........`	1125	100
ENST00000446874	GRCh37:7:44066550:44078607:-1	1085	`_......._`	1091	87
ENST00000446874	GRCh37:7:44066550:44078607:-1	1272	`__.......`	1266	87
ENST00000446874	GRCh37:7:44066550:44078607:-1	1287	`_......._`	1281	87
ENST00000446874	GRCh37:7:44066550:44078607:-1	1575	`__.......`	1581	87
ENST00000326391	GRCh37:7:44053161:44058769:-1	37	`_........`	30	100
ENST00000573488	ENSG00000262059 transcript	246	`_........`	239	100
ENST00000573488	ENSG00000262059 transcript	283	`_......._`	289	87
ENST00000573488	ENSG00000262059 transcript	1076	`_......._`	1082	87
ENST00000431260	ENSG00000226873 transcript	67	`_........`	60	100
ENST00000366223	ENSG00000203401 transcript	150	`_........`	157	100
ENST00000366223	ENSG00000203401 transcript	1100	`__.......`	1106	87
ENST00000366223	ENSG00000203401 transcript	1596	`_......._`	1590	87
ENST00000304061	ENSG00000170468 transcript	422	`_........`	429	100
ENST00000304061	ENSG00000170468 transcript	1438	`_........`	1431	100
ENST00000423186	GRCh37:7:74299873:74306687:-1	202	`_........`	195	100
ENST00000554078	ENSG00000259109 transcript	232	`_........`	225	100
ENST00000510337	ENSG00000235275 transcript	213	`_........`	206	100