VIRmiRNA | Resource for experimental viral miRNA and their targets

Predicted targets for your query miRNA sequence
>hbv-miR-3rc-3p
ggcucug

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Gene	Start	Alignment	End	% Identity
Query		1	`ggctctg`	7
ENST00000519308	ENSG00000254017 transcript	1115	`_.......`	1121	100
ENST00000574221	ENSG00000262486 transcript	36	`_.......`	42	100
ENST00000574221	ENSG00000262486 transcript	150	`_.......`	144	100
ENST00000574221	ENSG00000262486 transcript	160	`_.......`	154	100
ENST00000574221	ENSG00000262486 transcript	673	`_.......`	679	100
ENST00000574221	ENSG00000262486 transcript	736	`_.......`	742	100
ENST00000572797	GRCh37:HSCHR19LRC	190	`_.......`	196	100
ENST00000572797	GRCh37:HSCHR19LRC	559	`_.......`	565	100
ENST00000572797	GRCh37:HSCHR19LRC	673	`_.......`	667	100
ENST00000572797	GRCh37:HSCHR19LRC	683	`_.......`	677	100
ENST00000572797	GRCh37:HSCHR19LRC	1196	`_.......`	1202	100
ENST00000572797	GRCh37:HSCHR19LRC	1259	`_.......`	1265	100
ENST00000572797	GRCh37:HSCHR19LRC	1946	`_.......`	1940	100
ENST00000576395	ENSG00000262390 transcript	244	`_.......`	250	100
ENST00000572306	ENSG00000262604 transcript	72	`_.......`	78	100
ENST00000572306	ENSG00000262604 transcript	169	`_.......`	163	100
ENST00000572306	ENSG00000262604 transcript	292	`_.......`	286	100
ENST00000572306	ENSG00000262604 transcript	665	`_.......`	671	100
ENST00000571317	ENSG00000261998 transcript	403	`_.......`	409	100
ENST00000573530	ENSG00000262178 transcript	36	`_.......`	42	100
ENST00000573530	ENSG00000262178 transcript	150	`_.......`	144	100
ENST00000572034	ENSG00000262065 transcript	264	`_.......`	258	100
ENST00000573970	ENSG00000262035 transcript	265	`_.......`	259	100
ENST00000572625	ENSG00000262414 transcript	157	`_.......`	151	100
ENST00000573149	ENSG00000262055 transcript	264	`_.......`	270	100
ENST00000575731	ENSG00000262162 transcript	199	`_.......`	193	100
ENST00000572063	ENSG00000262438 transcript	284	`_.......`	290	100
ENST00000576771	ENSG00000262438 transcript	419	`_.......`	425	100
ENST00000607192	ENSG00000272284 transcript	349	`_.......`	355	100
ENST00000570800	ENSG00000263066 transcript	36	`_.......`	42	100
ENST00000570800	ENSG00000263066 transcript	150	`_.......`	144	100
ENST00000570800	ENSG00000263066 transcript	160	`_.......`	154	100
ENST00000570800	ENSG00000263066 transcript	673	`_.......`	679	100
ENST00000570800	ENSG00000263066 transcript	736	`_.......`	742	100
ENST00000573118	GRCh37:HSCHR19LRC	190	`_.......`	196	100
ENST00000573118	GRCh37:HSCHR19LRC	559	`_.......`	565	100
ENST00000573118	GRCh37:HSCHR19LRC	673	`_.......`	667	100
ENST00000573118	GRCh37:HSCHR19LRC	683	`_.......`	677	100
ENST00000573118	GRCh37:HSCHR19LRC	1196	`_.......`	1202	100
ENST00000573118	GRCh37:HSCHR19LRC	1259	`_.......`	1265	100
ENST00000573118	GRCh37:HSCHR19LRC	1946	`_.......`	1940	100
ENST00000572345	ENSG00000262437 transcript	244	`_.......`	250	100
ENST00000571683	ENSG00000263221 transcript	72	`_.......`	78	100
ENST00000571683	ENSG00000263221 transcript	169	`_.......`	163	100
ENST00000571683	ENSG00000263221 transcript	292	`_.......`	286	100
ENST00000571683	ENSG00000263221 transcript	665	`_.......`	671	100
ENST00000570849	ENSG00000262219 transcript	264	`_.......`	258	100
ENST00000572292	ENSG00000262849 transcript	265	`_.......`	259	100
ENST00000572114	ENSG00000263224 transcript	157	`_.......`	151	100
ENST00000572299	ENSG00000262548 transcript	36	`_.......`	42	100
ENST00000572299	ENSG00000262548 transcript	150	`_.......`	144	100
ENST00000572299	ENSG00000262548 transcript	160	`_.......`	154	100
ENST00000572299	ENSG00000262548 transcript	673	`_.......`	679	100
ENST00000572299	ENSG00000262548 transcript	736	`_.......`	742	100
ENST00000577002	GRCh37:HSCHR19LRC	190	`_.......`	196	100
ENST00000577002	GRCh37:HSCHR19LRC	559	`_.......`	565	100
ENST00000577002	GRCh37:HSCHR19LRC	673	`_.......`	667	100
ENST00000577002	GRCh37:HSCHR19LRC	683	`_.......`	677	100
ENST00000577002	GRCh37:HSCHR19LRC	1196	`_.......`	1202	100
ENST00000577002	GRCh37:HSCHR19LRC	1259	`_.......`	1265	100
ENST00000577002	GRCh37:HSCHR19LRC	1946	`_.......`	1940	100
ENST00000576070	ENSG00000262830 transcript	244	`_.......`	250	100
ENST00000574663	ENSG00000263251 transcript	72	`_.......`	78	100
ENST00000574663	ENSG00000263251 transcript	169	`_.......`	163	100
ENST00000574663	ENSG00000263251 transcript	292	`_.......`	286	100
ENST00000574663	ENSG00000263251 transcript	665	`_.......`	671	100
ENST00000575259	ENSG00000261988 transcript	36	`_.......`	42	100
ENST00000575259	ENSG00000261988 transcript	150	`_.......`	144	100
ENST00000570766	ENSG00000261890 transcript	264	`_.......`	258	100
ENST00000571686	ENSG00000262913 transcript	265	`_.......`	259	100
ENST00000572983	ENSG00000261979 transcript	157	`_.......`	151	100
ENST00000594115	ENSG00000268246 transcript	35	`_.......`	29	100
ENST00000601316	ENSG00000273022 transcript	775	`_.......`	781	100
ENST00000601316	ENSG00000273022 transcript	971	`_.......`	977	100
ENST00000601944	ENSG00000273041 transcript	775	`_.......`	781	100
ENST00000601944	ENSG00000273041 transcript	971	`_.......`	977	100
ENST00000609136	ENSG00000273339 transcript	1642	`_.......`	1648	100
ENST00000575990	ENSG00000263183 transcript	48	`_.......`	54	100
ENST00000575133	GRCh37:HSCHR10	189	`_.......`	195	100
ENST00000571758	ENSG00000262424 transcript	49	`_.......`	55	100
ENST00000598289	ENSG00000269581 transcript	3	`_.......`	9	100
ENST00000593743	ENSG00000269297 transcript	100	`_.......`	94	100
ENST00000596803	ENSG00000268826 transcript	1211	`_.......`	1217	100
ENST00000596803	ENSG00000268826 transcript	1456	`_.......`	1462	100
ENST00000596264	ENSG00000268933 transcript	3	`_.......`	9	100
ENST00000597460	ENSG00000269557 transcript	1255	`_.......`	1261	100
ENST00000599025	ENSG00000268096 transcript	66	`_.......`	72	100
ENST00000597324	ENSG00000268010 transcript	493	`_.......`	487	100
ENST00000599088	ENSG00000268608 transcript	347	`_.......`	341	100
ENST00000601868	ENSG00000268459 transcript	1120	`_.......`	1114	100
ENST00000594982	ENSG00000268914 transcript	260	`_.......`	254	100
ENST00000603850	ENSG00000271013 transcript	1917	`_.......`	1911	100
ENST00000603850	ENSG00000271013 transcript	2250	`_.......`	2244	100
ENST00000603850	ENSG00000271013 transcript	3448	`_.......`	3442	100
ENST00000603850	ENSG00000271013 transcript	3568	`_.......`	3562	100
ENST00000603850	ENSG00000271013 transcript	3628	`_.......`	3622	100
ENST00000603850	ENSG00000271013 transcript	3685	`_.......`	3679	100
ENST00000603850	ENSG00000271013 transcript	4096	`_.......`	4090	100
ENST00000603850	ENSG00000271013 transcript	5348	`_.......`	5342	100
ENST00000609483	GRCh37:HG1350	511	`_.......`	517	100
ENST00000594499	GRCh37:HG344	316	`_.......`	322	100
ENST00000601842	GRCh37:HG344	361	`_.......`	367	100
ENST00000601111	GRCh37:HG344	583	`_.......`	589	100
ENST00000580046	ENSG00000265153 transcript	211	`_.......`	217	100
ENST00000564936	GRCh37:HG987	557	`_.......`	563	100
ENST00000608557	ENSG00000273067 transcript	142	`_.......`	136	100
ENST00000610035	GRCh37:HG1082	488	`_.......`	482	100
ENST00000609989	ENSG00000272587 transcript	732	`_.......`	738	100
ENST00000609269	GRCh37:HG1082	33	`_.......`	39	100
ENST00000609138	ENSG00000273332 transcript	1792	`_.......`	1798	100
ENST00000582460	ENSG00000264938 transcript	433	`_.......`	427	100
ENST00000585117	ENSG00000265723 transcript	140	`_.......`	146	100
ENST00000608292	GRCh37:HG174	214	`_.......`	208	100
ENST00000608054	ENSG00000273195 transcript	444	`_.......`	450	100