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Creating dataset of small nucleotide binding proteins


This page allow users to extract nucleotide-binding proteins from PDB. In this module we used LPC (Ligand Protein Contact) software for creating dataset. For more information click help

Select the type of nucleotide (e.g. ATP) ATP  ADP  AMP  GTP  GDP  GMP  CTP  CDP  CMP 
UTP  UMP  UDP  TTP  TDP  TMP 
Ligand interacting amino acid.
Distance (A) between atoms of the ligand and the residue. From  To 
Contact surface area between the ligand and the residue. From To
Type of bond between the ligand and the interacting residue. ALL   HB  Arom  Phob  DC