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Datasets compiled from PDB (31st Dec 2012)

This page provides datasets compiled from release of PDB (31st Dec 2012). These datasets were generated using commonly used protocols like non-redundant chains, structures solved at high resolution. Compilation of more datasets in progress. For more information click help. Archive datasets.
Types of DatasetsDescription
of Dataset
NR chainsNo. of residuesDownload
Secondary structure
(assign using DSSP database,
chains using PDB select)
Eight state
(H,B,E,G,I,T,S,C)

Three state
[H=(G,H,I); E=(B,E); C=(T,S)]

Three state
[H=H; E=E; C=(G,I,B,T,S)]
5877


5877


5877
DSSP8


DSSP3_1


DSSP3_2
Data Description
Irregular Secondary structure
Mainly Tight Turns

(Promotif used for assignment)
Beta-Turns I
Beta-Turns I'
Beta-Turns II
Beta-Turns II'
Beta-Turns VI
Beta-Turns VIa1
Beta-Turns VIa2
Beta-Turns VIb
Beta-Turns VIII

6691
5424
2324
6618
3197
671
215
1028
4874
1682894
920527
1458248
689107
1673270
220094
72306
315549
1371491
BTI6691
BTI'5424
BTII2324
BTII'6618
BTIV3197
BTVIa1_671
BTVIa2_215
BTVIb1028
BTVIII4874
Data Description
Gamma-turn-C
Gamma-turn-I
1059
5833
350120
1578390
GT1059
GT5833
Data Description
Buldge-B
Buldge-C
Buldge-G
Bulge-S
Buldge-W
271
4926
3694
717
864
94314
1309084
1009877
228174
279730
BLGB271
BLGC4926
BLGG3694
BLGS717
BLGW864
Hairpin49311300669HPIN4931
Psiloop1197357336PLOOP1197
DNA/RNA interacting residuesDNA
RNA
417
282
121848
82104
DNA417
RNA282
DNA/RNA interacting proteinsDNA
RNA
417
282
DNA417
RNA282
Nucleotide interacting residuessATP
ADP
GTP
GDP
NAD
FAD
FMN
UDP
228
300
52
88
133
156
103
51
78730
120083
21966
31567
48431
64606
28648
17602
ATP228
ADP300
GTP52
GDP88
NAD133
FAD156
FMN103
UDP51
Nucleotide interacting ProteinsATP
ADP
GTP
GDP
NAD
FAD
FMN
UDP
228
300
52
88
133
156
103
51
ATP228
ADP300
GTP52
GDP88
NAD133
FAD156
FMN103
UDP51
Ligand binding residuesSulphate
Phosphate
NAG
HEM
BME
EDO
PLP
2604
1002
488
167
163
1095
64
720852
298104
163504
45249
45056
300384
26223
SO4_2604
PO4_1002
NAG488
HEM167
BME163
EDO1095
PLP64
Ligand binding proteinsSulphate
Phosphate
NAG
HEM
BME
EDO
PLP
2604
1002
488
167
163
1095
64
SO4_2604
PO4_1002
NAG488
HEM167
BME163
EDO1095
PLP64
Metal interacting residuesFe
Mg
Ca
Mn
Zn
Co
Ni
163
1384
1018
386
1118
149
243
50112
446568
325588
130969
326075
42862
61457
Fe163
MG1384
CA1018
MN386
ZN1118
CO149
NI243
Metal interacting proteinsFe
Mg
Ca
Mn
Zn
Co
Ni
163
1384
1018
386
1118
149
243
Fe163
MG1384
CA1018
MN386
ZN1118
CO149
NI243