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Extract PDB chain IDs for creating nucleotide interacting residue dataset
This page allows users to extract nucleotide interacting proteins PDB chain IDs by using their own PDB IDs. For more information click
help
Please upload your file. Do upload more than one PDB chain ids.
Upload a PDB chain ID list file:
Example file:
pdbid_list
Please select the type of nucleotide
ATP
GTP
ADP
FAD
NAD
GDP
FMN
Please select the ligand interacting amino acid. Default if all amino acid.
ALL
ALA
ARG
ASN
ASP
CYS
GLN
GLU
GLY
HIS
ILE
LEU
LYS
MET
PHE
PRO
SER
THR
TRP
TYR
VAL
Please select the nearest distance (A) between atoms of the ligand and the residue.
TO
Please select the contact surface area between the ligand and the residue.
TO
Please select the type of bond between the ligand and the interacting residue.
ALL
HB
Arom
Phob
DC