GenotrickA pipeline for whole genome assembly and annotation of Genomes



Important Links

Short Reads assembly

This module of Genotrick pipeline is designed to assemble whole genome of an organism from short reads (Illumina type). Whole genome assembly is performed with the help of Velvet software, at user defined parameters.For more information, please click HERE

To demostrate the server, please use the example input files.

Illumina data submission
Paired end short sequencing reads (i.e. Illumina reads) can be uploaded here. Please upload both files having forward and reverse reads, for detail (e.g. format) see example files in right column.
Upload file containing forward reads (Mate-1) :
Upload file containing reverse reads (Mate-2) :
Upload file containing single end reads:           
Genome assembler parameteres
Hash length (K) for genome assembly       e.g. 21
Covearge of Genome Sequencing              e.g. 60
Insert length                                                e.g. 350

File format option                         
Read type option                         

Email Address:

      Example input files
Following are example files of input short reads (i.e. paired end fastq reads)
Forward reads (Mate-1)
Reverse reads (Mate-2)
Example output Files
This is the contigs file generated after the assembly of input reads (i.e. paired end fastq reads) by this server at hash length 71 and coverage 60.Contigs generated

Note: Large amount of data processsing may be difficult at this server. User are advised to use standalone version for large data.