Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
SEC147426121639788 YP 980012.1 hypothetic523KLPHTAAVV HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B*0702,HLA-B*2705,HLA-B*5201,HLA-B62,MHC-Dd 10 HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
SEC147429121639788 YP 980012.1 hypothetic526HTAAVVTNM HLA-B*0702,HLA-B*3501,HLA-B*5801 3 HLA-A*0203,HLA-A*0206,HLA-B*5401,HLA-B*51,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301,HLA-A*6801 15
SEC147439121639788 YP 980012.1 hypothetic536EEAELVSRM HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B60,HLA-B61,MHC-Kk 6 HLA-B*5401,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
SEC147442121639788 YP 980012.1 hypothetic539ELVSRMGEV HLA-A2,HLA-A2.1,HLA-B14,HLA-B62,HLA-B8 5 HLA-B*5301,HLA-B*5401,HLA-B*51,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 14
SEC147453121639788 YP 980012.1 hypothetic550GELDRRQSI HLA-B14,HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B60,HLA-B61,MHC-Kk 7 HLA-A*1101,HLA-A3,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 12
SEC147454121639788 YP 980012.1 hypothetic551ELDRRQSIL HLA-A2,HLA-A2.1,HLA-B14,HLA-B*3801,HLA-B*3901,HLA-B*3902,HLA-B8,HLA-Cw*0401,MHC-Dd 9 HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
SEC147459121639788 YP 980012.1 hypothetic556QSILRQAGM HLA-B14,HLA-B*3501,HLA-B40,HLA-B*5801,MHC-Ld 5 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
SEC147461121639788 YP 980012.1 hypothetic558ILRQAGMKV HLA-A*0201,HLA-A2.1,HLA-B*51,HLA-B*5103,HLA-B62,HLA-B8 6 HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B*2706,Mamu-A*01 11
SEC147473121639788 YP 980012.1 hypothetic570GALSGVAEY HLA-A3,HLA-B*3501,HLA-B*4403,HLA-B*5801,HLA-B62,HLA-Cw*0702 6 HLA-A3,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
SEC147477121639788 YP 980012.1 hypothetic574GVAEYEKYR HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3302,HLA-A68.1 5 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 10
Showing 1 to 10 of 773 entries