Browse Epitopes |
This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein.
This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header.
The last three column present the field related to LBtope. The third last tells whether particular peptides is B cell epitope or not. The second last column display the score of B cell prediction from LBtope model and the last coulumn present the confidence of prediction.
Total number of predicted 9mer peptides are 143488 (corresponding to browse type bcell)
ID | gene ID | Protein Detail | Position | Sequence (9mer) | Lbtope Score | B cell confidence |
---|---|---|---|---|---|---|
SEC078099 | 253800927 | YP 003033929.1 hypothe | 278 | YGYQDWVPA | 0.50 | 66.61 |
SEC078107 | 253800927 | YP 003033929.1 hypothe | 286 | AGGIAFGLF | 0.39 | 62.92 |
SEC078144 | 253800927 | YP 003033929.1 hypothe | 323 | NEELLDPVA | 0.37 | 62.39 |
SEC078147 | 253800927 | YP 003033929.1 hypothe | 326 | LLDPVATPE | 0.44 | 64.79 |
SEC078171 | 253800927 | YP 003033929.1 hypothe | 350 | VPASAVRLT | 0.42 | 63.97 |
SEC078208 | 253800927 | YP 003033929.1 hypothe | 387 | VVRGHFFVH | 0.52 | 67.24 |
SEC078220 | 253800927 | YP 003033929.1 hypothe | 399 | VAGLITTVC | 0.37 | 62.19 |
SEC078330 | 253800919 | YP 003033921.1 hypothe | 7 | TKVQVSGWR | 0.88 | 79.32 |
SEC078337 | 253800919 | YP 003033921.1 hypothe | 14 | WRFLLRRLE | 0.37 | 62.45 |
SEC078351 | 253800919 | YP 003033921.1 hypothe | 28 | RDTRMFDDP | 0.75 | 74.98 |
Showing 1 to 10 of 1,000 entries