Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis strain is a common representative of the species complex. It was derived from an AIDS patient and has been characterized for virulence in the murine model of low-dose aerosol infection in that it could colonize the lung, proliferate within the tissue and disseminate to other organs. This strain will be used for comparative analysis with other Mycobacterium species.
CategoryNon tuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins5120
B cell epitopes (IEDB)27
T cell epitopes (IEDB)98
MHC binder (IEDB)164
No. of Vaccine Target3
B cell prediction (LBtope)62
Prediction of MHC class II binders (Propred)138
MHC class I prediction (Propred1)639
CTL epitope prediction (CTLpred)166
Prediction of Interferon-gamma inducing peptides (IFNepitope)338
Prediction of IL4 inducing peptides (IL4pred)618