Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis organism is a slowly growing species, with doubling times of around 22-24 hours. This bacterium is not common in the environment, and is predominantly found as an intracellular parasite.
CategoryNon tuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4350
B cell epitopes (IEDB)26
T cell epitopes (IEDB)74
MHC binder (IEDB)130
No. of Vaccine Target3
B cell prediction (LBtope)62
Prediction of MHC class II binders (Propred)138
MHC class I prediction (Propred1)639
CTL epitope prediction (CTLpred)166
Prediction of Interferon-gamma inducing peptides (IFNepitope)338
Prediction of IL4 inducing peptides (IL4pred)618