Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThe sequences are related to the Mycobacterium canettii strain (EMBL accession number PRJEA68135) recently deposited by the Sanger Institute, which is also included in this collaborative project.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4009
B cell epitopes (IEDB)91
T cell epitopes (IEDB)212
MHC binder (IEDB)330
No. of Vaccine Target149
B cell prediction (LBtope)4199
Prediction of MHC class II binders (Propred)7310
MHC class I prediction (Propred1)34308
CTL epitope prediction (CTLpred)8024
Prediction of Interferon-gamma inducing peptides (IFNepitope)21167
Prediction of IL4 inducing peptides (IL4pred)32964