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siRNA Id: | aspsirna0334
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siRNA Name: | siCOL7 G2043R mut19
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| Gene: | Collagen type VII alpha 1 (COL7A1) |
| Disease: | Dominant dystrophic epidermolysis bullosa(DDEB) |
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Wild allele/target (5'->3'): | GGGCUCCCAGGCAGGGCUG
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Mutant allele/target (5'->3'): | AGGCUCCCAGGCAGGGCUG
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Target Mutation: | c.6127G>A,p.Gly2043Arg
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Wild siRNA (As strand): | CCCGAGGGUCCGUCCCGAC
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ASP-siRNA (As strand): | UCCGAGGGUCCGUCCCGAC
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Mismatch position in siRNA: | U1C |
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Mutant allele (5'->3'): | AGGCUCCCAGGCAGGGCUG
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ASP-siRNA (As strand): | UCCGAGGGUCCGUCCCGAC
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ASP-siRNA efficacy for mutant allele: | 90
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Wild allele (5'->3'): | GGGCUCCCAGGCAGGGCUG
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ASP-siRNA (As strand): | UCCGAGGGUCCGUCCCGAC
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ASP-siRNA efficacy for wild allele: | 0
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Percentage discrimination for ASP-siRNA: | 90
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Wild allele (5'->3'): | GGGCUCCCAGGCAGGGCUG
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Wild siRNA (As strand): | CCCGAGGGUCCGUCCCGAC
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Wild sirna efficacy for wild allele: | 70
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Wild allele (5'->3'): | GGGCUCCCAGGCAGGGCUG
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ASP-siRNA (As strand): | UCCGAGGGUCCGUCCCGAC
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Wild sirna efficacy for mutant allele: | 88
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Percentage discrimination for wild siRNA: | -18
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| Concentration: | 10nM |
| Orientation: | Sense |
| Mismatch in: | siRNA |
| UniProt ID: | Q02388 |
| Target sequence: | GGAAAGCCUGGUAUUCCCGGGCUCCCAGGCAGGGCUG |
| Genbank Accesion: | NM_000094.3 |
| Cell-line: | 293T |
| Experimental technique used: | Dual luciferase reporter assay |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | Invitrogen,Sigma |
| Post-transfection duration: | 48 hours |
| OMID ID: | 131750 |
| KEGG disease ID: | H00584 |
| Reference: | 22336946 |
