aspsirna0568 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna0568
siRNA Name: LM1
Gene:Amyloid beta (A4) precursor protein(APP)
Disease:Alzheimers disease
Wild allele/target (5'->3'): GCGACAGUGAUCGUCAUCACCU
Mutant allele/target (5'->3'):GCGACAGUGAUCAUCAUCACCU
Target Mutation: c.2149G>A,p.Val717Ile
Wild siRNA (As strand):CGCUGUCACUAGCAGUAGUGGA
ASP-siRNA (As strand):CGCUGUCACUAGUAGUAGUGGA
Mismatch position in siRNA: U10C
Mutant allele (5'->3'): GCGACAGUGAUCAUCAUCACCU
ASP-siRNA (As strand):CGCUGUCACUAGUAGUAGUGGA
ASP-siRNA efficacy for mutant allele:10
Wild allele (5'->3'): GCGACAGUGAUCGUCAUCACCU
ASP-siRNA (As strand):CGCUGUCACUAGUAGUAGUGGA
ASP-siRNA efficacy for wild allele:60
Percentage discrimination for ASP-siRNA:-50
Wild allele (5'->3'): GCGACAGUGAUCGUCAUCACCU
Wild siRNA (As strand):CGCUGUCACUAGCAGUAGUGGA
Wild sirna efficacy for wild allele:NA
Wild allele (5'->3'): GCGACAGUGAUCGUCAUCACCU
ASP-siRNA (As strand):CGCUGUCACUAGUAGUAGUGGA
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:NA
Concentration:100pmol
Orientation:Sense
Mismatch in:siRNA
UniProt ID: P05067
Target sequence: AGCGACAGUGAUCGUCAUCACCU
Genbank Accesion: NM_000484.3
Cell-line: CHO
Experimental technique used: RT-PCR
Transfection method: Lipofectamine 2000
siRNA expression method: Epicentre Technologies
Post-transfection duration: 48 hours
OMID ID: 104300
KEGG disease ID:H00056
Reference:16426772

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