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siRNA Id: | aspsirna0690
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siRNA Name: | G9S
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| Gene: | Ataxin-3 (ATXN3) |
| Disease: | Spino Cerebellar Ataxia type-3 (SCA-3) |
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Wild allele/target (5'->3'): | GCAGCAGCAGGGGGACCUA
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Mutant allele/target (5'->3'): | GCAGCAGCAGCGGGACCUA
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Target Mutation: | c.892_894CAG(8_36) (p.Gln298_Gln305=)
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Wild siRNA (As strand): | CGUCGUCGUCCCCCUGGAU
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ASP-siRNA (As strand): | CGUCGUCGUCGCCCUGGAU
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Mismatch position in siRNA: | G9C |
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Mutant allele (5'->3'): | GCAGCAGCAGCGGGACCUA
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ASP-siRNA (As strand): | CGUCGUCGUCGCCCUGGAU
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ASP-siRNA efficacy for mutant allele: | 45
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Wild allele (5'->3'): | GCAGCAGCAGGGGGACCUA
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ASP-siRNA (As strand): | CGUCGUCGUCGCCCUGGAU
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ASP-siRNA efficacy for wild allele: | 85
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Percentage discrimination for ASP-siRNA: | -40
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Wild allele (5'->3'): | GCAGCAGCAGGGGGACCUA
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Wild siRNA (As strand): | CGUCGUCGUCCCCCUGGAU
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Wild sirna efficacy for wild allele: | 60
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Wild allele (5'->3'): | GCAGCAGCAGGGGGACCUA
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ASP-siRNA (As strand): | CGUCGUCGUCGCCCUGGAU
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Wild sirna efficacy for mutant allele: | 15
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Percentage discrimination for wild siRNA: | 45
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| Concentration: | 50nM |
| Orientation: | Sense |
| Mismatch in: | siRNA |
| UniProt ID: | P54252 |
| Target sequence: | CAGCAGCAGCAGGGGGACCUAUCAGG |
| Genbank Accesion: | NM_004993.5 |
| Cell-line: | Fibroblast |
| Experimental technique used: | Western blot |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | Metabion |
| Post-transfection duration: | 72 hours |
| OMID ID: | 109150 |
| KEGG disease ID: | H00063 |
| Reference: | 22397573 |
