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siRNA Id: | aspsirna0704
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siRNA Name: | G16
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| Gene: | Ataxin-1 (ATXN1) |
| Disease: | Spino Cerebellar Ataxia type-1 (SCA-1) |
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Wild allele/target (5'->3'): | AGCUGAGAGCAGCCGGCUG
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Mutant allele/target (5'->3'): | AGCCGAGAGCAGCCGGCUU
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Target Mutation: | c.589_591CAG(36_38),p.Gln208_His209
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Wild siRNA (As strand): | UCGACUCUCGUCGGCCGAC
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ASP-siRNA (As strand): | UCGGCUCUCGUCGGCCGAC
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Mismatch position in siRNA: | G16A(As),U1G(S) |
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Mutant allele (5'->3'): | AGCCGAGAGCAGCCGGCUU
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ASP-siRNA (As strand): | UCGGCUCUCGUCGGCCGAC
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ASP-siRNA efficacy for mutant allele: | 47
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Wild allele (5'->3'): | AGCUGAGAGCAGCCGGCUG
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ASP-siRNA (As strand): | UCGGCUCUCGUCGGCCGAC
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ASP-siRNA efficacy for wild allele: | 78
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Percentage discrimination for ASP-siRNA: | -31
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Wild allele (5'->3'): | AGCUGAGAGCAGCCGGCUG
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Wild siRNA (As strand): | UCGACUCUCGUCGGCCGAC
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Wild sirna efficacy for wild allele: | 60
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Wild allele (5'->3'): | AGCUGAGAGCAGCCGGCUG
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ASP-siRNA (As strand): | UCGGCUCUCGUCGGCCGAC
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Wild sirna efficacy for mutant allele: | 15
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Percentage discrimination for wild siRNA: | 45
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| Concentration: | 50nM |
| Orientation: | Sense |
| Mismatch in: | siRNA |
| UniProt ID: | P0C7T5 |
| Target sequence: | CACCAAGAAAGCTGAGAGCAGCCGGCT |
| Genbank Accesion: | NM_000332.3 |
| Cell-line: | Fibroblast |
| Experimental technique used: | RT-PCR |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | Metabion |
| Post-transfection duration: | 72 hours |
| OMID ID: | 302500 |
| KEGG disease ID: | H00063 |
| Reference: | 22397573 |
