aspsirna0873 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna0873
siRNA Name: siP2
Gene:Presenilin1 (PSEN1)
Disease:Alzheimers disease
Wild allele/target (5'->3'): CUCCCGGCAGGUGGUGGAGCA
Mutant allele/target (5'->3'):GACCCGGCAGGUGGUGGAGCA
Target Mutation: c.458C>G, p.Leu153Val
Wild siRNA (As strand):GAGGGCCGUCCACCACCUCGU
ASP-siRNA (As strand):CUGGGCCGUCCACCACCUCGU
Mismatch position in siRNA: C19G,U18A
Mutant allele (5'->3'): GACCCGGCAGGUGGUGGAGCA
ASP-siRNA (As strand):CUGGGCCGUCCACCACCUCGU
ASP-siRNA efficacy for mutant allele:70
Wild allele (5'->3'): CUCCCGGCAGGUGGUGGAGCA
ASP-siRNA (As strand):CUGGGCCGUCCACCACCUCGU
ASP-siRNA efficacy for wild allele:20
Percentage discrimination for ASP-siRNA:50
Wild allele (5'->3'): CUCCCGGCAGGUGGUGGAGCA
Wild siRNA (As strand):GAGGGCCGUCCACCACCUCGU
Wild sirna efficacy for wild allele:NA
Wild allele (5'->3'): CUCCCGGCAGGUGGUGGAGCA
ASP-siRNA (As strand):CUGGGCCGUCCACCACCUCGU
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:NA
Concentration:100microM
Orientation:Sense
Mismatch in:siRNA
UniProt ID: P49768
Target sequence: GGTAACTCCCGGCAGGTGGTGGAGCA
Genbank Accesion: NM_000021.3
Cell-line: HeLa
Experimental technique used: Dual luciferase reporter assay
Transfection method: Lipofectamine
siRNA expression method: Constructed by PCR
Post-transfection duration: NA
OMID ID: 104300
KEGG disease ID:H00056
Reference:18776243

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