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siRNA Id: | aspsirna0929
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siRNA Name: | MJD2
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| Gene: | Ataxin-3 (ATXN3) |
| Disease: | Machado-Joseph Disease (MJD)/Spinocerebellar ataxia type 3 (SCA3) |
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Wild allele/target (5'->3'): | GCAGCAGGGGGACCUAUCA
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Mutant allele/target (5'->3'): | GCAGCAGCGGGACCUAUCA
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Target Mutation: | c.209_211CAG(8_36),(p.Gln298_Gln305=)
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Wild siRNA (As strand): | CGUCGUCCCCCUGGAUAGU
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ASP-siRNA (As strand): | CGUCGUCGCCCUGGAUAGU
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Mismatch position in siRNA: | G12C |
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Mutant allele (5'->3'): | GCAGCAGCGGGACCUAUCA
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ASP-siRNA (As strand): | CGUCGUCGCCCUGGAUAGU
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ASP-siRNA efficacy for mutant allele: | 28
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Wild allele (5'->3'): | GCAGCAGGGGGACCUAUCA
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ASP-siRNA (As strand): | CGUCGUCGCCCUGGAUAGU
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ASP-siRNA efficacy for wild allele: | 90
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Percentage discrimination for ASP-siRNA: | -62
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Wild allele (5'->3'): | GCAGCAGGGGGACCUAUCA
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Wild siRNA (As strand): | CGUCGUCCCCCUGGAUAGU
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Wild sirna efficacy for wild allele: | NA
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Wild allele (5'->3'): | GCAGCAGGGGGACCUAUCA
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ASP-siRNA (As strand): | CGUCGUCGCCCUGGAUAGU
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Wild sirna efficacy for mutant allele: | NA
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Percentage discrimination for wild siRNA: | NA
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| Concentration: | 10nM |
| Orientation: | Double strand |
| Mismatch in: | siRNA |
| UniProt ID: | P54252 |
| Target sequence: | CAGCAGCAGCAGCAGCAGCAGGGGGACCUAUCAGGA |
| Genbank Accesion: | NM_004993.5 |
| Cell-line: | 293T |
| Experimental technique used: | Western blot |
| Transfection method: | Lipofectamine Plus |
| siRNA expression method: | Chemically synthesized |
| Post-transfection duration: | 48 hours |
| OMID ID: | 109150 |
| KEGG disease ID: | H00063 |
| Reference: | 15236410 |
