aspsirna0935 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna0935
siRNA Name: P-SUPER K-RAS V12
Gene:K-RAS (KRAS)
Disease:Cancer
Wild allele/target (5'->3'): GUUGGAGCUGGUGGCGUAG
Mutant allele/target (5'->3'):GUUGGAGCUGUUGGCGUAG
Target Mutation: c.35G>T,p.Gly12Val
Wild siRNA (As strand):CAACCUCGACCACCGCAUC
ASP-siRNA (As strand):CAACCUCGACAACCGCAUC
Mismatch position in siRNA: A9C
Mutant allele (5'->3'): GUUGGAGCUGUUGGCGUAG
ASP-siRNA (As strand):CAACCUCGACAACCGCAUC
ASP-siRNA efficacy for mutant allele:NA
Wild allele (5'->3'): GUUGGAGCUGGUGGCGUAG
ASP-siRNA (As strand):CAACCUCGACAACCGCAUC
ASP-siRNA efficacy for wild allele:NA
Percentage discrimination for ASP-siRNA:NA
Wild allele (5'->3'): GUUGGAGCUGGUGGCGUAG
Wild siRNA (As strand):CAACCUCGACCACCGCAUC
Wild sirna efficacy for wild allele:50
Wild allele (5'->3'): GUUGGAGCUGGUGGCGUAG
ASP-siRNA (As strand):CAACCUCGACAACCGCAUC
Wild sirna efficacy for mutant allele:29
Percentage discrimination for wild siRNA:21
Concentration:0.03microg
Orientation:Double strand
Mismatch in:siRNA
UniProt ID: P01116
Target sequence: GTTGGAGCTGTTGGCGTAG
Genbank Accesion: NM_033360.2
Cell-line: CAPAN-1
Experimental technique used: Western blot
Transfection method: Polybrene
siRNA expression method: Chemically synthesized
Post-transfection duration: 48 hours
OMID ID: 211980
KEGG disease ID:H00013
Reference:12242156

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