aspsirna0981 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna0981
siRNA Name: d9
Gene:Low density lipoprotein receptor-related protein 8 (LRP8)
Disease:Neurological disorder
Wild allele/target (5'->3'): NA
Mutant allele/target (5'->3'):GUCGUCGUCGUCGUCGUCGUCGUCGUC
Target Mutation: NA
Wild siRNA (As strand):NA
ASP-siRNA (As strand):CAGCAGCAGCAGCAGCAGCAGCAGCAG
Mismatch position in siRNA: NA
Mutant allele (5'->3'): GUCGUCGUCGUCGUCGUCGUCGUCGUC
ASP-siRNA (As strand):CAGCAGCAGCAGCAGCAGCAGCAGCAG
ASP-siRNA efficacy for mutant allele:60
Wild allele (5'->3'): NA
ASP-siRNA (As strand):CAGCAGCAGCAGCAGCAGCAGCAGCAG
ASP-siRNA efficacy for wild allele:20
Percentage discrimination for ASP-siRNA:40
Wild allele (5'->3'): NA
Wild siRNA (As strand):NA
Wild sirna efficacy for wild allele:NA
Wild allele (5'->3'): NA
ASP-siRNA (As strand):CAGCAGCAGCAGCAGCAGCAGCAGCAG
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:NA
Concentration:20nM
Orientation:Double strand
Mismatch in:siRNA
UniProt ID: Q14114
Target sequence: GACGGCGACCGCGACTGCAAAGACAAATCGGACGA
Genbank Accesion: NM_004631.4
Cell-line: Fibroblast
Experimental technique used: RT-PCR
Transfection method: Lipofectamine 2000
siRNA expression method: Metabion
Post-transfection duration: 24 hours
OMID ID: 104300
KEGG disease ID:H00056
Reference:21427085

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