aspsirna1776 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna1776
siRNA Name: Dn1(#2)-3'm2m12
Gene:DNA (cytosine-5-)-methyltransferase 1 (DNMT1)
Disease:NA
Wild allele/target (5'->3'): GUGACUUGGAAACCAAAUU
Mutant allele/target (5'->3'):GUGACUUUGAAACCAAAAA
Target Mutation: NA
Wild siRNA (As strand):CACUGAACCUUUGGUUUAA
ASP-siRNA (As strand):CACUGAACCUUUGGUUUAA
Mismatch position in siRNA: U1A,A8C,U2A
Mutant allele (5'->3'): GUGACUUUGAAACCAAAAA
ASP-siRNA (As strand):CACUGAACCUUUGGUUUAA
ASP-siRNA efficacy for mutant allele:NA
Wild allele (5'->3'): GUGACUUGGAAACCAAAUU
ASP-siRNA (As strand):CACUGAACCUUUGGUUUAA
ASP-siRNA efficacy for wild allele:NA
Percentage discrimination for ASP-siRNA:NA
Wild allele (5'->3'): GUGACUUGGAAACCAAAUU
Wild siRNA (As strand):CACUGAACCUUUGGUUUAA
Wild sirna efficacy for wild allele:NA
Wild allele (5'->3'): GUGACUUGGAAACCAAAUU
ASP-siRNA (As strand):CACUGAACCUUUGGUUUAA
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:70
Concentration:100nM
Orientation:Double strand
Mismatch in:siRNA
UniProt ID: P26358
Target sequence: AAAGAATCAGTTATGTGACTTGGAAACCAAATT
Genbank Accesion: NM_001379
Cell-line: HeLa
Experimental technique used: Dual luciferase reporter assay
Transfection method: JetSI transfection reagent
siRNA expression method: Proligo
Post-transfection duration: 48 hours
OMID ID: NA
KEGG disease ID:NA
Reference:14741366

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