aspsirna1787 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna1787
siRNA Name: si10CM9
Gene:Polymerase (RNA) II (DNA directed) polypeptide A (POLR2A)
Disease:Cancer
Wild allele/target (5'->3'): GCUGCGCUAGGGCGAAGAC
Mutant allele/target (5'->3'):GCUGCGCUACUGCGAAGAC
Target Mutation: c.2907C>T,(p.Ile969=)
Wild siRNA (As strand):CGACGCGAUAGCGCUUCUG
ASP-siRNA (As strand):CGACGCGAUGACGCUUCUG
Mismatch position in siRNA: G10A,A9G
Mutant allele (5'->3'): GCUGCGCUACUGCGAAGAC
ASP-siRNA (As strand):CGACGCGAUGACGCUUCUG
ASP-siRNA efficacy for mutant allele:NA
Wild allele (5'->3'): GCUGCGCUAGGGCGAAGAC
ASP-siRNA (As strand):CGACGCGAUGACGCUUCUG
ASP-siRNA efficacy for wild allele:60
Percentage discrimination for ASP-siRNA:NA
Wild allele (5'->3'): GCUGCGCUAGGGCGAAGAC
Wild siRNA (As strand):CGACGCGAUAGCGCUUCUG
Wild sirna efficacy for wild allele:20
Wild allele (5'->3'): GCUGCGCUAGGGCGAAGAC
ASP-siRNA (As strand):CGACGCGAUGACGCUUCUG
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:NA
Concentration:100nM
Orientation:Double strand
Mismatch in:siRNA
UniProt ID: P24928
Target sequence: TTCCACGCCATGGGGGGTCGTGAGGGGCTCATTGACA
Genbank Accesion: NM_000937.4
Cell-line: 15PC3
Experimental technique used: Northern blot
Transfection method: Lipofectamine 2000
siRNA expression method: Proligo
Post-transfection duration: 24 hours
OMID ID: 180660
KEGG disease ID:H00014
Reference:19165236
siRNA Id:aspsirna1787
siRNA Name: siCD46
Gene:Complement regulatory protein (CD46)
Disease:Hemolytic uremic syndrome
Wild allele/target (5'->3'): CUUAUUGGAGAGAGCACGA
Mutant allele/target (5'->3'):CUGAUUGGAGAGAGCACGA
Target Mutation: c.104G>A, p.Cys35Tyr
Wild siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
Mismatch position in siRNA: A:G clash
Mutant allele (5'->3'): CUGAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA efficacy for mutant allele:65
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA efficacy for wild allele:93
Percentage discrimination for ASP-siRNA:28
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
Wild siRNA (As strand):GAAUAACCUCUCUCGUGCU
Wild sirna efficacy for wild allele:93
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
Wild sirna efficacy for mutant allele:65
Percentage discrimination for wild siRNA:28
Concentration:13nM
Orientation:Sense
Mismatch in:siRNA
UniProt ID: P15529
Target sequence: GCCCCCAATATGTGAAAAG
Genbank Accesion: NM_002389.4
Cell-line: HEK293
Experimental technique used: Dual luciferase reporter assay
Transfection method: Lipofectamine 2000
siRNA expression method: Dharmacon
Post-transfection duration: 24 hours
OMID ID: 120920
KEGG disease ID:H00106, H0027
Reference:15781493

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