aspsirna1791 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna1791
siRNA Name: TTR-p8
Gene:Transthyretin (TTR)
Disease:Amyloidogenic transthyretin amyloidosis
Wild allele/target (5'->3'): UGUGGCCGUGCAUGUGUUC
Mutant allele/target (5'->3'):UGUGGCCAUGCAUGUGUUC
Target Mutation: c.148G>A,p.Val50Met
Wild siRNA (As strand):ACACCGGCACGUACACAAG
ASP-siRNA (As strand):ACACCGGUACGUACACAAG
Mismatch position in siRNA: U12C
Mutant allele (5'->3'): UGUGGCCAUGCAUGUGUUC
ASP-siRNA (As strand):ACACCGGUACGUACACAAG
ASP-siRNA efficacy for mutant allele:NA
Wild allele (5'->3'): UGUGGCCGUGCAUGUGUUC
ASP-siRNA (As strand):ACACCGGUACGUACACAAG
ASP-siRNA efficacy for wild allele:5
Percentage discrimination for ASP-siRNA:NA
Wild allele (5'->3'): UGUGGCCGUGCAUGUGUUC
Wild siRNA (As strand):ACACCGGCACGUACACAAG
Wild sirna efficacy for wild allele:67
Wild allele (5'->3'): UGUGGCCGUGCAUGUGUUC
ASP-siRNA (As strand):ACACCGGUACGUACACAAG
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:NA
Concentration:20pMol
Orientation:Sense
Mismatch in:siRNA
UniProt ID: P02766
Target sequence: GCCAUCAAUGUGGCCAUGCAUGUGUUCAGAAAG
Genbank Accesion: NM_000371.3
Cell-line: Cos-7
Experimental technique used: Western blot
Transfection method: Lipofectamine 2000
siRNA expression method: Qiagen
Post-transfection duration: 48 hours
OMID ID: 176300
KEGG disease ID:105210
Reference:16225852
siRNA Id:aspsirna1791
siRNA Name: siCD46
Gene:Complement regulatory protein (CD46)
Disease:Hemolytic uremic syndrome
Wild allele/target (5'->3'): CUUAUUGGAGAGAGCACGA
Mutant allele/target (5'->3'):CUUUUUGGAGAGAGCACGA
Target Mutation: c.104G>A, p.Cys35Tyr
Wild siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
Mismatch position in siRNA: U:U clash
Mutant allele (5'->3'): CUUUUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA efficacy for mutant allele:68
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA efficacy for wild allele:93
Percentage discrimination for ASP-siRNA:25
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
Wild siRNA (As strand):GAAUAACCUCUCUCGUGCU
Wild sirna efficacy for wild allele:93
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
Wild sirna efficacy for mutant allele:68
Percentage discrimination for wild siRNA:25
Concentration:13nM
Orientation:Sense
Mismatch in:siRNA
UniProt ID: P15529
Target sequence: GCCCCCAATATGTGAAAAG
Genbank Accesion: NM_002389.4
Cell-line: HEK293
Experimental technique used: Dual luciferase reporter assay
Transfection method: Lipofectamine 2000
siRNA expression method: Dharmacon
Post-transfection duration: 24 hours
OMID ID: 120920
KEGG disease ID:H00106, H0027
Reference:15781493

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