Purple | = Wild vs mutant target sequence along with mutation information |
Brown | = Wild vs ASP-siRNA description along with positional differnece between two |
Light pink | = ASP siRNA efficacy for mutant vs wild allele |
Green | = Wild siRNA efficacy for Wild vs Mutant allele |
siRNA Id: | aspsirna1791 |
siRNA Name: | TTR-p8 |
Gene: | Transthyretin (TTR) |
Disease: | Amyloidogenic transthyretin amyloidosis |
Wild allele/target (5'->3'): | UGUGGCCGUGCAUGUGUUC |
Mutant allele/target (5'->3'): | UGUGGCCAUGCAUGUGUUC |
Target Mutation: | c.148G>A,p.Val50Met |
Wild siRNA (As strand): | ACACCGGCACGUACACAAG |
ASP-siRNA (As strand): | ACACCGGUACGUACACAAG |
Mismatch position in siRNA: | U12C |
Mutant allele (5'->3'): | UGUGGCCAUGCAUGUGUUC |
ASP-siRNA (As strand): | ACACCGGUACGUACACAAG |
ASP-siRNA efficacy for mutant allele: | NA |
Wild allele (5'->3'): | UGUGGCCGUGCAUGUGUUC |
ASP-siRNA (As strand): | ACACCGGUACGUACACAAG |
ASP-siRNA efficacy for wild allele: | 5 |
Percentage discrimination for ASP-siRNA: | NA |
Wild allele (5'->3'): | UGUGGCCGUGCAUGUGUUC |
Wild siRNA (As strand): | ACACCGGCACGUACACAAG |
Wild sirna efficacy for wild allele: | 67 |
Wild allele (5'->3'): | UGUGGCCGUGCAUGUGUUC |
ASP-siRNA (As strand): | ACACCGGUACGUACACAAG |
Wild sirna efficacy for mutant allele: | NA |
Percentage discrimination for wild siRNA: | NA |
Concentration: | 20pMol |
Orientation: | Sense |
Mismatch in: | siRNA |
UniProt ID: | P02766 |
Target sequence: | GCCAUCAAUGUGGCCAUGCAUGUGUUCAGAAAG |
Genbank Accesion: | NM_000371.3 |
Cell-line: | Cos-7 |
Experimental technique used: | Western blot |
Transfection method: | Lipofectamine 2000 |
siRNA expression method: | Qiagen |
Post-transfection duration: | 48 hours |
OMID ID: | 176300 |
KEGG disease ID: | 105210 |
Reference: | 16225852 |
siRNA Id: | aspsirna1791 |
siRNA Name: | siCD46 |
Gene: | Complement regulatory protein (CD46) |
Disease: | Hemolytic uremic syndrome |
Wild allele/target (5'->3'): | CUUAUUGGAGAGAGCACGA |
Mutant allele/target (5'->3'): | CUUUUUGGAGAGAGCACGA |
Target Mutation: | c.104G>A, p.Cys35Tyr |
Wild siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
ASP-siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
Mismatch position in siRNA: | U:U clash |
Mutant allele (5'->3'): | CUUUUUGGAGAGAGCACGA |
ASP-siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
ASP-siRNA efficacy for mutant allele: | 68 |
Wild allele (5'->3'): | CUUAUUGGAGAGAGCACGA |
ASP-siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
ASP-siRNA efficacy for wild allele: | 93 |
Percentage discrimination for ASP-siRNA: | 25 |
Wild allele (5'->3'): | CUUAUUGGAGAGAGCACGA |
Wild siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
Wild sirna efficacy for wild allele: | 93 |
Wild allele (5'->3'): | CUUAUUGGAGAGAGCACGA |
ASP-siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
Wild sirna efficacy for mutant allele: | 68 |
Percentage discrimination for wild siRNA: | 25 |
Concentration: | 13nM |
Orientation: | Sense |
Mismatch in: | siRNA |
UniProt ID: | P15529 |
Target sequence: | GCCCCCAATATGTGAAAAG |
Genbank Accesion: | NM_002389.4 |
Cell-line: | HEK293 |
Experimental technique used: | Dual luciferase reporter assay |
Transfection method: | Lipofectamine 2000 |
siRNA expression method: | Dharmacon |
Post-transfection duration: | 24 hours |
OMID ID: | 120920 |
KEGG disease ID: | H00106, H0027 |
Reference: | 15781493 |