Purple | = Wild vs mutant target sequence along with mutation information |
Brown | = Wild vs ASP-siRNA description along with positional differnece between two |
Light pink | = ASP siRNA efficacy for mutant vs wild allele |
Green | = Wild siRNA efficacy for Wild vs Mutant allele |
siRNA Id: | aspsirna1795 |
siRNA Name: | M1 |
Gene: | keratin 6a (KRT6a) |
Disease: | Pachyonychia congenita (PC) |
Wild allele/target (5'->3'): | GACCCUCAACAACAAGUUU |
Mutant allele/target (5'->3'): | GACCCUCAAAAACAAGUUU |
Target Mutation: | c.513C>A,p.Asn171Lys |
Wild siRNA (As strand): | CUGGGAGUUGUUGUUCAAA |
ASP-siRNA (As strand): | CUGGGAGUUUUUGUUCAAA |
Mismatch position in siRNA: | U10G |
Mutant allele (5'->3'): | GACCCUCAAAAACAAGUUU |
ASP-siRNA (As strand): | CUGGGAGUUUUUGUUCAAA |
ASP-siRNA efficacy for mutant allele: | 15 |
Wild allele (5'->3'): | GACCCUCAACAACAAGUUU |
ASP-siRNA (As strand): | CUGGGAGUUUUUGUUCAAA |
ASP-siRNA efficacy for wild allele: | 55 |
Percentage discrimination for ASP-siRNA: | -40 |
Wild allele (5'->3'): | GACCCUCAACAACAAGUUU |
Wild siRNA (As strand): | CUGGGAGUUGUUGUUCAAA |
Wild sirna efficacy for wild allele: | NA |
Wild allele (5'->3'): | GACCCUCAACAACAAGUUU |
ASP-siRNA (As strand): | CUGGGAGUUUUUGUUCAAA |
Wild sirna efficacy for mutant allele: | NA |
Percentage discrimination for wild siRNA: | NA |
Concentration: | 800ng |
Orientation: | Sense |
Mismatch in: | siRNA |
UniProt ID: | P02538 |
Target sequence: | AGCGUGAACAGAUCAAGACCCUCAACAACAAGUUUGCCUCCUUCA |
Genbank Accesion: | NM_005554.3 |
Cell-line: | 293 FT |
Experimental technique used: | Flourescence microscopy |
Transfection method: | Lipofectamine 2000 |
siRNA expression method: | Qiagen |
Post-transfection duration: | 24 hours |
OMID ID: | 167200 |
KEGG disease ID: | H00684 |
Reference: | 17145926 |
siRNA Id: | aspsirna1795 |
siRNA Name: | siCD46 |
Gene: | Complement regulatory protein (CD46) |
Disease: | Hemolytic uremic syndrome |
Wild allele/target (5'->3'): | CUUAUUGGAGAGAGCACGA |
Mutant allele/target (5'->3'): | CUUAGUGGAGAGAGCACGA |
Target Mutation: | c.104G>A, p.Cys35Tyr |
Wild siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
ASP-siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
Mismatch position in siRNA: | A:G clash |
Mutant allele (5'->3'): | CUUAGUGGAGAGAGCACGA |
ASP-siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
ASP-siRNA efficacy for mutant allele: | 18 |
Wild allele (5'->3'): | CUUAUUGGAGAGAGCACGA |
ASP-siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
ASP-siRNA efficacy for wild allele: | 93 |
Percentage discrimination for ASP-siRNA: | 75 |
Wild allele (5'->3'): | CUUAUUGGAGAGAGCACGA |
Wild siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
Wild sirna efficacy for wild allele: | 93 |
Wild allele (5'->3'): | CUUAUUGGAGAGAGCACGA |
ASP-siRNA (As strand): | GAAUAACCUCUCUCGUGCU |
Wild sirna efficacy for mutant allele: | 18 |
Percentage discrimination for wild siRNA: | 75 |
Concentration: | 13nM |
Orientation: | Sense |
Mismatch in: | siRNA |
UniProt ID: | P15529 |
Target sequence: | GCCCCCAATATGTGAAAAG |
Genbank Accesion: | NM_002389.4 |
Cell-line: | HEK293 |
Experimental technique used: | Dual luciferase reporter assay |
Transfection method: | Lipofectamine 2000 |
siRNA expression method: | Dharmacon |
Post-transfection duration: | 24 hours |
OMID ID: | 120920 |
KEGG disease ID: | H00106, H0027 |
Reference: | 15781493 |