aspsirna1796 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna1796
siRNA Name: M2
Gene:keratin 6a (KRT6a)
Disease:Pachyonychia congenita (PC)
Wild allele/target (5'->3'): AGAUCAAGACCCUCAACAA
Mutant allele/target (5'->3'):AGAUCAAGACCCUCAAAAA
Target Mutation: c.513C>A,p.Asn171Lys
Wild siRNA (As strand):UCUAGUUCUGGGAGUUGUU
ASP-siRNA (As strand):UCUAGUUCUGGGAGUUUUU
Mismatch position in siRNA: U3G
Mutant allele (5'->3'): AGAUCAAGACCCUCAAAAA
ASP-siRNA (As strand):UCUAGUUCUGGGAGUUUUU
ASP-siRNA efficacy for mutant allele:50
Wild allele (5'->3'): AGAUCAAGACCCUCAACAA
ASP-siRNA (As strand):UCUAGUUCUGGGAGUUUUU
ASP-siRNA efficacy for wild allele:85
Percentage discrimination for ASP-siRNA:-35
Wild allele (5'->3'): AGAUCAAGACCCUCAACAA
Wild siRNA (As strand):UCUAGUUCUGGGAGUUGUU
Wild sirna efficacy for wild allele:NA
Wild allele (5'->3'): AGAUCAAGACCCUCAACAA
ASP-siRNA (As strand):UCUAGUUCUGGGAGUUUUU
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:NA
Concentration:800ng
Orientation:Sense
Mismatch in:siRNA
UniProt ID: P02538
Target sequence: AGCGUGAACAGAUCAAGACCCUCAACAACAAGUUUGCCUCCUUCA
Genbank Accesion: NM_005554.3
Cell-line: 293 FT
Experimental technique used: Flourescence microscopy
Transfection method: Lipofectamine 2000
siRNA expression method: Qiagen
Post-transfection duration: 24 hours
OMID ID: 167200
KEGG disease ID:H00684
Reference:17145926
siRNA Id:aspsirna1796
siRNA Name: siCD46
Gene:Complement regulatory protein (CD46)
Disease:Hemolytic uremic syndrome
Wild allele/target (5'->3'): CUUAUUGGAGAGAGCACGA
Mutant allele/target (5'->3'):CUUACUGGAGAGAGCACGA
Target Mutation: c.104G>A, p.Cys35Tyr
Wild siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
Mismatch position in siRNA: A:C clash
Mutant allele (5'->3'): CUUACUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA efficacy for mutant allele:83
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA efficacy for wild allele:93
Percentage discrimination for ASP-siRNA:10
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
Wild siRNA (As strand):GAAUAACCUCUCUCGUGCU
Wild sirna efficacy for wild allele:93
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
Wild sirna efficacy for mutant allele:83
Percentage discrimination for wild siRNA:10
Concentration:13nM
Orientation:Sense
Mismatch in:siRNA
UniProt ID: P15529
Target sequence: GCCCCCAATATGTGAAAAG
Genbank Accesion: NM_002389.4
Cell-line: HEK293
Experimental technique used: Dual luciferase reporter assay
Transfection method: Lipofectamine 2000
siRNA expression method: Dharmacon
Post-transfection duration: 24 hours
OMID ID: 120920
KEGG disease ID:H00106, H0027
Reference:15781493

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