aspsirna1834 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna1834
siRNA Name: m7Ci
Gene:Flap structure-specific endonuclease 1 (Fen1)
Disease:Werner syndrome
Wild allele/target (5'->3'): AAGCAGCACAAUGAUGAGUGC
Mutant allele/target (5'->3'):AAGCAGCACAAUGAGGAGUGC
Target Mutation: NA
Wild siRNA (As strand):UUCGUCGUGUUACUACUCACG
ASP-siRNA (As strand):UUCGUCGUGUUACUCCUCACG
Mismatch position in siRNA: C7A
Mutant allele (5'->3'): AAGCAGCACAAUGAGGAGUGC
ASP-siRNA (As strand):UUCGUCGUGUUACUCCUCACG
ASP-siRNA efficacy for mutant allele:NA
Wild allele (5'->3'): AAGCAGCACAAUGAUGAGUGC
ASP-siRNA (As strand):UUCGUCGUGUUACUCCUCACG
ASP-siRNA efficacy for wild allele:72
Percentage discrimination for ASP-siRNA:NA
Wild allele (5'->3'): AAGCAGCACAAUGAUGAGUGC
Wild siRNA (As strand):UUCGUCGUGUUACUACUCACG
Wild sirna efficacy for wild allele:Moderately effective
Wild allele (5'->3'): AAGCAGCACAAUGAUGAGUGC
ASP-siRNA (As strand):UUCGUCGUGUUACUCCUCACG
Wild sirna efficacy for mutant allele:Poor efficacy
Percentage discrimination for wild siRNA:Moderate discrimination
Concentration:1.44mg
Orientation:Double strand
Mismatch in:siRNA
UniProt ID: P39748
Target sequence: GCAGCACAAUGAGGAGUGCAA
Genbank Accesion: NM_004111.5
Cell-line: HeLa
Experimental technique used: Dual luciferase reporter assay
Transfection method: Lipofectamine 2000
siRNA expression method: Ambion
Post-transfection duration: 24 hours
OMID ID: 277700
KEGG disease ID:H00296
Reference:16113241
siRNA Id:aspsirna1834
siRNA Name: siCD46
Gene:Complement regulatory protein (CD46)
Disease:Hemolytic uremic syndrome
Wild allele/target (5'->3'): CUUAUUGGAGAGAGCACGA
Mutant allele/target (5'->3'):CUUAUUGGAGAGAGAACGA
Target Mutation: c.104G>A, p.Cys35Tyr
Wild siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
Mismatch position in siRNA: G:A clash
Mutant allele (5'->3'): CUUAUUGGAGAGAGAACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA efficacy for mutant allele:60
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
ASP-siRNA efficacy for wild allele:93
Percentage discrimination for ASP-siRNA:33
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
Wild siRNA (As strand):GAAUAACCUCUCUCGUGCU
Wild sirna efficacy for wild allele:93
Wild allele (5'->3'): CUUAUUGGAGAGAGCACGA
ASP-siRNA (As strand):GAAUAACCUCUCUCGUGCU
Wild sirna efficacy for mutant allele:60
Percentage discrimination for wild siRNA:33
Concentration:13nM
Orientation:Sense
Mismatch in:siRNA
UniProt ID: P15529
Target sequence: GCCCCCAATATGTGAAAAG
Genbank Accesion: NM_002389.4
Cell-line: HEK293
Experimental technique used: Dual luciferase reporter assay
Transfection method: Lipofectamine 2000
siRNA expression method: Dharmacon
Post-transfection duration: 24 hours
OMID ID: 120920
KEGG disease ID:H00106, H0027
Reference:15781493

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