aspsirna2315 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna2315
siRNA Name: P1
Gene:Cu,Zn superoxide dismutase (SOD1)
Disease:Amyotrophic Lateral Sclerosis (ALS)
Wild allele/target (5'->3'): AGGCAUGUUGGAGACUUGG
Mutant allele/target (5'->3'):AGGCAUGUUGGAGACUUGC
Target Mutation: c.256G>C,p.Gly86Arg
Wild siRNA (As strand):UCCGUACAACCUCUGAACC
ASP-siRNA (As strand):UCCGUACAACCUCUGAACG
Mismatch position in siRNA: G1C
Mutant allele (5'->3'): AGGCAUGUUGGAGACUUGC
ASP-siRNA (As strand):UCCGUACAACCUCUGAACG
ASP-siRNA efficacy for mutant allele:NA
Wild allele (5'->3'): AGGCAUGUUGGAGACUUGG
ASP-siRNA (As strand):UCCGUACAACCUCUGAACG
ASP-siRNA efficacy for wild allele:NA
Percentage discrimination for ASP-siRNA:8
Wild allele (5'->3'): AGGCAUGUUGGAGACUUGG
Wild siRNA (As strand):UCCGUACAACCUCUGAACC
Wild sirna efficacy for wild allele:NA
Wild allele (5'->3'): AGGCAUGUUGGAGACUUGG
ASP-siRNA (As strand):UCCGUACAACCUCUGAACG
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:80
Concentration:100nM
Orientation:Antisense
Mismatch in:siRNA
UniProt ID: P00441
Target sequence: AGGCAUGUUGGAGACUUGGGCAAUGUGACUGCUGACAAAGAUGGU
Genbank Accesion: NM_000454.4
Cell-line: HeLa
Experimental technique used: RT-PCR
Transfection method: OligofectAMINE
siRNA expression method: Chemically synthesized
Post-transfection duration: 24 hours
OMID ID: 105400
KEGG disease ID:H00058
Reference:US2007/0259827A1

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