aspsirna2325 details

Purple = Wild vs mutant target sequence along with mutation information
Brown= Wild vs ASP-siRNA description along with positional differnece between two
Light pink= ASP siRNA efficacy for mutant vs wild allele
Green= Wild siRNA efficacy for Wild vs Mutant allele
siRNA Id:aspsirna2325
siRNA Name: P11
Gene:Cu,Zn superoxide dismutase (SOD1)
Disease:Amyotrophic Lateral Sclerosis (ALS)
Wild allele/target (5'->3'): GAGACUUGGGCAAUGUGAC
Mutant allele/target (5'->3'):GAGACUUGCGCAAUGUGAC
Target Mutation: c.256G>C,p.Gly86Arg
Wild siRNA (As strand):CUCUGAACCCGUUACACUG
ASP-siRNA (As strand):CUCUGAACGCGUUACACUG
Mismatch position in siRNA: G11C
Mutant allele (5'->3'): GAGACUUGCGCAAUGUGAC
ASP-siRNA (As strand):CUCUGAACGCGUUACACUG
ASP-siRNA efficacy for mutant allele:NA
Wild allele (5'->3'): GAGACUUGGGCAAUGUGAC
ASP-siRNA (As strand):CUCUGAACGCGUUACACUG
ASP-siRNA efficacy for wild allele:NA
Percentage discrimination for ASP-siRNA:35
Wild allele (5'->3'): GAGACUUGGGCAAUGUGAC
Wild siRNA (As strand):CUCUGAACCCGUUACACUG
Wild sirna efficacy for wild allele:NA
Wild allele (5'->3'): GAGACUUGGGCAAUGUGAC
ASP-siRNA (As strand):CUCUGAACGCGUUACACUG
Wild sirna efficacy for mutant allele:NA
Percentage discrimination for wild siRNA:25
Concentration:100nM
Orientation:Antisense
Mismatch in:siRNA
UniProt ID: P00441
Target sequence: AGGCAUGUUGGAGACUUGGGCAAUGUGACUGCUGACAAAGAUGGU
Genbank Accesion: NM_000454.4
Cell-line: HeLa
Experimental technique used: RT-PCR
Transfection method: OligofectAMINE
siRNA expression method: Chemically synthesized
Post-transfection duration: 24 hours
OMID ID: 105400
KEGG disease ID:H00058
Reference:US2007/0259827A1

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