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siRNA Id: | aspsirna3446
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siRNA Name: | sh39Ap16
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| Gene: | Hungtintin (HTT) |
| Disease: | Huntington disease (HD) |
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Wild allele/target (5'->3'): | GUACUUCAACGCUAGAA
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Mutant allele/target (5'->3'): | GUAAUUCAACGCUAGAA
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Target Mutation: | NM_002111.7:c.5165C>A
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Wild siRNA (As strand): | CAUGAAGUUGCGAUCUU
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ASP-siRNA (As strand): | CAUUAAGUUGCGAUCUU
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Mismatch position in siRNA: | U16G |
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Mutant allele (5'->3'): | GUAAUUCAACGCUAGAA
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ASP-siRNA (As strand): | CAUUAAGUUGCGAUCUU
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ASP-siRNA efficacy for mutant allele: | 100
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Wild allele (5'->3'): | GUACUUCAACGCUAGAA
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ASP-siRNA (As strand): | CAUUAAGUUGCGAUCUU
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ASP-siRNA efficacy for wild allele: | 40
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Percentage discrimination for ASP-siRNA: | 60
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Wild allele (5'->3'): | GUACUUCAACGCUAGAA
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Wild siRNA (As strand): | CAUGAAGUUGCGAUCUU
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Wild sirna efficacy for wild allele: | 88
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Wild allele (5'->3'): | GUACUUCAACGCUAGAA
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ASP-siRNA (As strand): | CAUUAAGUUGCGAUCUU
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Wild sirna efficacy for mutant allele: | 15
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Percentage discrimination for wild siRNA: | 73
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| Concentration: | 6nM |
| Orientation: | Double strand |
| Mismatch in: | siRNA |
| UniProt ID: | P42858 |
| Target sequence: | AGCTTTGATGGATTCTAA |
| Genbank Accesion: | NM_002111.7 |
| Cell-line: | HEK293T |
| Experimental technique used: | Western blot |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | Invitrogen |
| Post-transfection duration: | 48 hours |
| OMID ID: | 143100 |
| KEGG disease ID: | H00059 |
| Reference: | 24926995 |
