| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Gene | Start | Alignment | End | % Identity |
| Query | 1 | atcttctcgatttcttttt | 19 | ||
| ENST00000396830 | GRCh37:12:6648773:6658279:-1 | 36 | _...............c.. | 53 | 89 |
| ENST00000472558 | GRCh37:12:6648127:6658431:-1 | 188 | _...............c.. | 205 | 89 |
| ENST00000441264 | ENSG00000236994 transcript | 662 | ....c..t........... | 644 | 89 |